PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096827.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family FAR1
Protein Properties Length: 788aa    MW: 90527 Da    PI: 9.0056
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096827.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.91.1e-2575180190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkekdgkwevt 79 
                     +fY+eYA++vGFs  +++s++s+ +g++++++fvC+++g+++ ++                  +++ r +r+ ++t+Cka+l+vk+++dg+w ++
  XP_011096827.1  75 NFYKEYASSVGFSAIIKASRRSRISGKFIDAKFVCTRYGSKRGTSLYensqpaddtasrdpvkKKRGRINRSASKTDCKACLHVKRRQDGRWTIS 169
                     6**************************************999887778899*********998888889************************** PP

            FAR1  80 kleleHnHela 90 
                     ++ +eHnHel+
  XP_011096827.1 170 SFLSEHNHELV 180
                     *********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2375180IPR004330FAR1 DNA binding domain
PfamPF105517.6E-29294387IPR018289MULE transposase domain
PROSITE profilePS509669.916574610IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-6581603IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-7585612IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MRIPLDPPTA ENHKHNHLFA DTATVEVRSG DQATAVAPEY DRSKLADGDG GETSYRKSLE  60
PHGSMEFESK EDAFNFYKEY ASSVGFSAII KASRRSRISG KFIDAKFVCT RYGSKRGTSL  120
YENSQPADDT ASRDPVKKKR GRINRSASKT DCKACLHVKR RQDGRWTISS FLSEHNHELV  180
LDQAGRTSLD ICHHNAYALN AVQAKKKKTF ISMSPQSGRV QKAEGHATAG SSFYGSRLGF  240
REGDAQVMFE YFSCMQEENP YFFYAMDLDR EQHLKNVFWV DAKGRIDYQI FGDVVLFDTM  300
YKKNEFKLPF VPFIGVNNHF QFLLLGSALV ADESKSTYVW LMRAWIRSMR GQVPKVILTD  360
QDPALREAIA EVLPGSRHCF CLWHILSKIQ EKLGCVIRQH ENFMDKFYKC ILKAQTEAQF  420
EKRWWKLVDR FDLRTDQWVQ SLYDERLRWV PMFMKDIFLA GLSSTQRLDS ITSLLDKCLS  480
RKTSLKEFLH QYTIMLQDKY EDEAKADFDT WHRQPGLKSP SPYGKQMAKI YTHAVFKKFQ  540
VEVLGVVACH PKLEGKDGPT TTFKVQDFEQ NQVHKVIWNE KTADTSCTCR LFEYNGFLCR  600
HVMIILQISG VNNIPGKYIL KRWTKDAKKR EAVKQIDATV SRNQRYNDLC QRACKLGNEG  660
SLCQETYSIV FTALEAALIK CESINSSVQN VTGPSSPSND RLHEFEVTRG KFSGKTIKEG  720
IISGKEKGYL NFRPSAVDCS YVSQESVRWM FVSWNQNVMI NIGTTKFESS NYWWHFWQPG  780
YCSSGPTE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096827.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096826.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
RefseqXP_011096827.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
TrEMBLA0A2G9I7C50.0A0A2G9I7C5_9LAMI; Uncharacterized protein
STRINGVIT_01s0011g01470.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.10.0FAR1 family protein