PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011096824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 813aa MW: 92851.7 Da PI: 8.7781 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.8 | 1.2e-25 | 75 | 180 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY+eYA++vGFs +++s++s+ +g++++++fvC+++g+++ ++ +++ r +r+ ++t+Cka+l+vk+++dg+w ++ XP_011096824.1 75 NFYKEYASSVGFSAIIKASRRSRISGKFIDAKFVCTRYGSKRGTSLYensqpaddtasrdpvkKKRGRINRSASKTDCKACLHVKRRQDGRWTIS 169 6**************************************999887778899*********998888889************************** PP FAR1 80 kleleHnHela 90 ++ +eHnHel+ XP_011096824.1 170 SFLSEHNHELV 180 *********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-23 | 75 | 180 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.9E-29 | 294 | 387 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.916 | 574 | 610 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.6E-6 | 581 | 603 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.5E-7 | 585 | 612 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 813 aa Download sequence Send to blast |
MRIPLDPPTA ENHKHNHLFA DTATVEVRSG DQATAVAPEY DRSKLADGDG GETSYRKSLE 60 PHGSMEFESK EDAFNFYKEY ASSVGFSAII KASRRSRISG KFIDAKFVCT RYGSKRGTSL 120 YENSQPADDT ASRDPVKKKR GRINRSASKT DCKACLHVKR RQDGRWTISS FLSEHNHELV 180 LDQAGRTSLD ICHHNAYALN AVQAKKKKTF ISMSPQSGRV QKAEGHATAG SSFYGSRLGF 240 REGDAQVMFE YFSCMQEENP YFFYAMDLDR EQHLKNVFWV DAKGRIDYQI FGDVVLFDTM 300 YKKNEFKLPF VPFIGVNNHF QFLLLGSALV ADESKSTYVW LMRAWIRSMR GQVPKVILTD 360 QDPALREAIA EVLPGSRHCF CLWHILSKIQ EKLGCVIRQH ENFMDKFYKC ILKAQTEAQF 420 EKRWWKLVDR FDLRTDQWVQ SLYDERLRWV PMFMKDIFLA GLSSTQRLDS ITSLLDKCLS 480 RKTSLKEFLH QYTIMLQDKY EDEAKADFDT WHRQPGLKSP SPYGKQMAKI YTHAVFKKFQ 540 VEVLGVVACH PKLEGKDGPT TTFKVQDFEQ NQVHKVIWNE KTADTSCTCR LFEYNGFLCR 600 HVMIILQISG VNNIPGKYIL KRWTKDAKKR EAVKQIDATV SRNQRYNDLC QRACKLGNEG 660 SLCQETYSIV FTALEAALIK CESINSSVQN VTGPSSPSND RLHEFEVTRG KFSGKTIKEG 720 IISGKEKGYL NFRPSAVDCS YVSQESVRWM GQLNLRVPTI GGISGNQDIV PVDQLNRIDD 780 CQAHIADLVG QWNSTASSNI AHHLCLERLH ETV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011096824.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096824.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
TrEMBL | A0A2G9I7C5 | 0.0 | A0A2G9I7C5_9LAMI; Uncharacterized protein | ||||
STRING | VIT_01s0011g01470.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA496 | 21 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |