PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096409.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 360aa    MW: 40567 Da    PI: 5.7347
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.63.2e-32106188272
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssase 72 
                     ag+kdrhsk++T++g RdRRvRls  +a++f+d+qd+LG+d++sk+i+WL+++ak ai +l                + s + +
  XP_011096409.1 106 AGRKDRHSKVCTARGTRDRRVRLSPRTAIQFYDVQDRLGYDRPSKAIDWLMKEAKSAIEALHHEppplavdeyfraaNVSEN-H 188
                     89************************************************************99555544444443211111.1 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.7E-31107191IPR005333Transcription factor, TCP
PROSITE profilePS5136930.656108166IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDIPSSHHLR APDDEEDLLE ELEDGDNSIS EDVAFQDPSQ QTFFSYFNQP QNFNGNSSFD  60
VHLAKIHPQR LMQDQGLNLA SANLKAKRRK AAEIIELHGG RILRSAGRKD RHSKVCTARG  120
TRDRRVRLSP RTAIQFYDVQ DRLGYDRPSK AIDWLMKEAK SAIEALHHEP PPLAVDEYFR  180
AANVSENHSF PKGKLQQKLQ ESGRILNSES GMIQNLEDLN NDNPISCFGL FTNADALLSS  240
TEFRAYPHDC FNSSISRSEA PEDSILYSSY QEGLLSAPLT TPRDIFETNL EMANMQRIFT  300
RNFATGGGEH YSSVNSPPVH FPASQDLGHS LIFSQREPLQ SSNINSSPIS TQFPDRFIPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-18113166154Putative transcription factor PCF6
5zkt_B1e-18113166154Putative transcription factor PCF6
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096409.10.0transcription factor PCF7-like
TrEMBLA0A2G9I0L41e-101A0A2G9I0L4_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-36TCP family protein