PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011096357.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HB-other

Protein Properties

Length: 1661aa MW: 187853 Da PI: 4.9809

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011096357.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	23	79	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r kR+ t+ qle+Le+ ++ ++yps+++r+eL++klgLt+rq ++WF+ rR k+kk XP_011096357.1 23 RPKRQMKTPFQLEVLEKTYATEMYPSEATRAELSEKLGLTDRQLQMWFCHRRLKDKK 79 579****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-19	6	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-17	11	80	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.119	20	80	IPR001356	Homeobox domain
SMART	SM00389	1.1E-19	22	84	IPR001356	Homeobox domain
CDD	cd00086	2.32E-15	23	80	No hit	No description
Pfam	PF00046	5.9E-17	23	79	IPR001356	Homeobox domain
SMART	SM00571	3.4E-19	504	563	IPR018501	DDT domain
PROSITE profile	PS50827	15.889	504	563	IPR018501	DDT domain
Pfam	PF02791	9.2E-17	505	560	IPR018501	DDT domain
Pfam	PF05066	7.3E-14	686	753	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.1E-9	866	909	IPR028942	WHIM1 domain
Pfam	PF15613	7.6E-14	1032	1104	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1661 aa Download sequence Send to blast
MEASSEGEIN RNMNQSPTEG SKRPKRQMKT PFQLEVLEKT YATEMYPSEA TRAELSEKLG 60 LTDRQLQMWF CHRRLKDKKE AVGMAAMKPR ATGSGGRKGL TESPREELMT TEPVSGHGSG 120 SGSGSGSGSG SSQFDNGEDT PMVPMRYYES PRAIMECRVI DCVEAQLGEP LREDGPILGV 180 EFDELPPGAF GAPIVPAEQQ DRYRNSYDTK LYGQYDVKHI KASSAGPHEA VESKIRADTY 240 GHVAPAYLYD PPVDVPTTKS LSNMHGNAHL AREHGVEGQT KSMDVYSQPG RQMQFSVSPR 300 NADFVTNNED NLHMERKRKS DEARIAREVQ AHEKKIRKEL EKQDLLRRKR EEQMRKEMER 360 QDRERRKEEQ RMIREQQRQE EKFQREERRE MERREKFMQK ELLRAERRKQ KEERRREKEA 420 ARQKAAIERA TARRIAKESM ELIEDERLEL MELAAASRGL PSILSLDYDT LQNLESFRES 480 LCEFPPNSVQ LRMPFAIQPW INSEENVGNL LMVWKFCVTF ADVLGLWPFT LDEFIQAFHD 540 YDARLLGEIH IAVLQLIIKD IEDVVRTPSG GPGTNQYSAV NPEGGHPHIV EGAYVWGFDI 600 RNWQKHLNPL TWPEILRQFA LSAGLGPQLK KKGIDRVSPN DNDESKGCEE IVSTLRNGSA 660 AENAVAIMQE KGFSLQRRSR HRLTPGTVKF AAYHVLALEG SKGLNVIELA EKIQKSGLRD 720 LTTSKTPEAS ISVALSRDPV LFERIAPSTY CVRPAFRKDP ADAESIIAAA KEKIQRYANG 780 FLADQNVDEE ERDDDSDSDV AEGTEVDALA TPLADNKNTD GNEVGSCSRN GKDKLLDDTA 840 PRNGICSVDI AEANPDQGVE IDESRSGEPW VQGLTEGEYS DLSVEERLNA LVALIGIANE 900 GNSIRVILED RMDAANALKK QMWAEAQLDK RRMREEFITK FYDSSFNAVA EGGLSPLVAE 960 NKIYDLSATT LGKDDSSVAV EDVRSAVDNS AQDISMGQFI SPAQQNGHTT ERSRLQLKSY 1020 IGHKAEELYV YRSLPLGQDR RRNRYWQFVA SPSSQDPGSG RIFVESPNGC WRLVDTEEAF 1080 DALLTSLDTR GTRESHLHIM LQKIEVCFKE CVQRDRLFPN ILDHNRIKDG LEAVELNSSL 1140 ACESVESPGS AVYTSTSDIC EPSRSFRVDM GRNETEKKNF LKRYEDLQTW MWKECLNSTI 1200 VRAVAYGKKR CLPLFGICDV CLSTYDAKRG SCPSSHRNHD KVGAKGNSSQ QFDDENKFMD 1260 RTDYMSNSSP LRIRLIKALL TLLEVSVPSE ALHSSWMEDR RKTWGLELQN CSSIEGLLQI 1320 LTQFEGAIKR DYLSADFETT EELMCYCDSS RGAAYGFNYT GSVPQLPWIP KTTAAVALRF 1380 LELDASIFYT PNQKAESHDE KTVEALPQKF ALRYGYTKDI QKAEAMEFDR HGSIKEENWD 1440 HFRDTPGSSG NRQVIRGRGG GRPRRRSQKG LMGSISQSSR RVMKQGETLS QILLEQGVRT 1500 PGQKHGRGRR TLRRRRTEKK LVVETPQDYL DDRDTFKDVE EEPRNSGREE LDNFRTRSIV 1560 ENDNSSNSME AGDSDDNANE DMYHYEKWNG ASYGAIANRS NEMMEMSEED ADEIEDENGY 1620 DEEDGENLEG DMEINEDDSD RDVGGMRDEA SDSSDSGDYS D

Sequence ? help Back to Top

Protein Sequence Length: 1661 aa Download sequence Send to blast

MEASSEGEIN RNMNQSPTEG SKRPKRQMKT PFQLEVLEKT YATEMYPSEA TRAELSEKLG  60
LTDRQLQMWF CHRRLKDKKE AVGMAAMKPR ATGSGGRKGL TESPREELMT TEPVSGHGSG  120
SGSGSGSGSG SSQFDNGEDT PMVPMRYYES PRAIMECRVI DCVEAQLGEP LREDGPILGV  180
EFDELPPGAF GAPIVPAEQQ DRYRNSYDTK LYGQYDVKHI KASSAGPHEA VESKIRADTY  240
GHVAPAYLYD PPVDVPTTKS LSNMHGNAHL AREHGVEGQT KSMDVYSQPG RQMQFSVSPR  300
NADFVTNNED NLHMERKRKS DEARIAREVQ AHEKKIRKEL EKQDLLRRKR EEQMRKEMER  360
QDRERRKEEQ RMIREQQRQE EKFQREERRE MERREKFMQK ELLRAERRKQ KEERRREKEA  420
ARQKAAIERA TARRIAKESM ELIEDERLEL MELAAASRGL PSILSLDYDT LQNLESFRES  480
LCEFPPNSVQ LRMPFAIQPW INSEENVGNL LMVWKFCVTF ADVLGLWPFT LDEFIQAFHD  540
YDARLLGEIH IAVLQLIIKD IEDVVRTPSG GPGTNQYSAV NPEGGHPHIV EGAYVWGFDI  600
RNWQKHLNPL TWPEILRQFA LSAGLGPQLK KKGIDRVSPN DNDESKGCEE IVSTLRNGSA  660
AENAVAIMQE KGFSLQRRSR HRLTPGTVKF AAYHVLALEG SKGLNVIELA EKIQKSGLRD  720
LTTSKTPEAS ISVALSRDPV LFERIAPSTY CVRPAFRKDP ADAESIIAAA KEKIQRYANG  780
FLADQNVDEE ERDDDSDSDV AEGTEVDALA TPLADNKNTD GNEVGSCSRN GKDKLLDDTA  840
PRNGICSVDI AEANPDQGVE IDESRSGEPW VQGLTEGEYS DLSVEERLNA LVALIGIANE  900
GNSIRVILED RMDAANALKK QMWAEAQLDK RRMREEFITK FYDSSFNAVA EGGLSPLVAE  960
NKIYDLSATT LGKDDSSVAV EDVRSAVDNS AQDISMGQFI SPAQQNGHTT ERSRLQLKSY  1020
IGHKAEELYV YRSLPLGQDR RRNRYWQFVA SPSSQDPGSG RIFVESPNGC WRLVDTEEAF  1080
DALLTSLDTR GTRESHLHIM LQKIEVCFKE CVQRDRLFPN ILDHNRIKDG LEAVELNSSL  1140
ACESVESPGS AVYTSTSDIC EPSRSFRVDM GRNETEKKNF LKRYEDLQTW MWKECLNSTI  1200
VRAVAYGKKR CLPLFGICDV CLSTYDAKRG SCPSSHRNHD KVGAKGNSSQ QFDDENKFMD  1260
RTDYMSNSSP LRIRLIKALL TLLEVSVPSE ALHSSWMEDR RKTWGLELQN CSSIEGLLQI  1320
LTQFEGAIKR DYLSADFETT EELMCYCDSS RGAAYGFNYT GSVPQLPWIP KTTAAVALRF  1380
LELDASIFYT PNQKAESHDE KTVEALPQKF ALRYGYTKDI QKAEAMEFDR HGSIKEENWD  1440
HFRDTPGSSG NRQVIRGRGG GRPRRRSQKG LMGSISQSSR RVMKQGETLS QILLEQGVRT  1500
PGQKHGRGRR TLRRRRTEKK LVVETPQDYL DDRDTFKDVE EEPRNSGREE LDNFRTRSIV  1560
ENDNSSNSME AGDSDDNANE DMYHYEKWNG ASYGAIANRS NEMMEMSEED ADEIEDENGY  1620
DEEDGENLEG DMEINEDDSD RDVGGMRDEA SDSSDSGDYS D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	79	RRLKDKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011096357.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096357.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2G9GMV7	0.0	A0A2G9GMV7_9LAMI; Transcription factor PHOX2/ARIX, contains HOX domain
STRING	Migut.M01107.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1