PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011096299.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HSF | ||||||||
Protein Properties | Length: 200aa MW: 23433.1 Da PI: 9.8757 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 100.5 | 1.6e-31 | 12 | 111 | 2 | 102 |
HHHHHHHHHCTG........GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 Flkklyeilede........elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+y++le+e k+++sw+ +gn fvv+ + +f++ +Lp+yFkh+nf+SF+RQLn+YgFkk+ +++ weF+h++F++ XP_011096299.1 12 FLSKTYDLLEEEreaervggGKKKIVSWNLEGNGFVVWCPADFSDLMLPRYFKHNNFSSFIRQLNTYGFKKTASKR---------WEFQHEKFRR 97 9*********888888888899**************************************************9988.........********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkks 102 g ++ll +++rkk XP_011096299.1 98 GCRHLLAEMRRKKC 111 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.7E-33 | 6 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.2E-39 | 8 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.04E-25 | 9 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.6E-28 | 12 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MSCRKSKCPA PFLSKTYDLL EEEREAERVG GGKKKIVSWN LEGNGFVVWC PADFSDLMLP 60 RYFKHNNFSS FIRQLNTYGF KKTASKRWEF QHEKFRRGCR HLLAEMRRKK CQPSAFPSYL 120 KPSAHHPPTQ DNKSIAATAT ASEVLFMELM EENKKLRRER LELELQIAHF KTMEMKLLEC 180 LSHPTPTHHY PPSIPINYLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdk_A | 8e-16 | 8 | 109 | 7 | 110 | Heat shock factor protein 2 |
5hdk_B | 8e-16 | 8 | 109 | 7 | 110 | Heat shock factor protein 2 |
5hdk_C | 8e-16 | 8 | 109 | 7 | 110 | Heat shock factor protein 2 |
5hdk_D | 8e-16 | 8 | 109 | 7 | 110 | Heat shock factor protein 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011096299.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096299.1 | 1e-149 | heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A2J6MET9 | 8e-79 | A0A2J6MET9_LACSA; Uncharacterized protein | ||||
STRING | Solyc02g078340.2.1 | 1e-78 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10707 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 1e-35 | heat shock factor 4 |