PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096226.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 301aa    MW: 33821.9 Da    PI: 5.1287
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096226.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.82.5e-31631522100
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++l ++e+++lisws++gnsfvv++++ fa +vLp yFkh+nf+SF+ QLn YgFkk++ e+         we+k+++F+kg+k+ll++
  XP_011096226.1  63 FLLKIYDMLGNDETNSLISWSSTGNSFVVTNPQLFAVNVLPIYFKHRNFQSFITQLNSYGFKKISWEQ---------WEYKNEYFRKGEKHLLKN 148
                     9****************************************************************998.........****************** PP

                     XXXX CS
    HSF_DNA-bind  97 ikrk 100
                     ikr 
  XP_011096226.1 149 IKRI 152
                     **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-4059152IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3159151IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.3E-3360151IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-146386IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.2E-2863151IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-14101113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-14114126IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAAEEEENGL VNNGDKHKDP DKAVTEIVVL DSDASETDII NGAESGSGRA GRSSCVSRAL  60
PPFLLKIYDM LGNDETNSLI SWSSTGNSFV VTNPQLFAVN VLPIYFKHRN FQSFITQLNS  120
YGFKKISWEQ WEYKNEYFRK GEKHLLKNIK RIYRSNSHRT RSAAPGVDSS SCSRNIEEKL  180
KLLKKENDLV NSEIKKLKEK QEILEEKVAS LTYQAMPTMC SDPGSCSATS MANILELISE  240
RFIQQGKMVL DEGETGQHQP NAFNSLVDLI GESSDWVEYI KEMQENGQSS QILNSNSMSQ  300
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-204615117128Heat shock factor protein 1
5d5v_B3e-204615117128Heat shock factor protein 1
5d5v_D3e-204615117128Heat shock factor protein 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096226.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554080.10.0heat stress transcription factor A-6a-like
TrEMBLA0A2G9HMB22e-75A0A2G9HMB2_9LAMI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.15e-34heat shock transcription factor A6B