PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096177.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family G2-like
Protein Properties Length: 368aa    MW: 40615.7 Da    PI: 8.0191
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-32220275156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     kpr++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  XP_011096177.1 220 KPRRCWSPDLHRRFVHALHMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 275
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-17217278IPR009057Homeodomain-like
PROSITE profilePS5129413.74217277IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-28218278IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-25220275IPR006447Myb domain, plants
PfamPF002492.6E-7222273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MITSADNIHP MQLNSCGEQK TEGTQKLQDF VARLEEERFK IDAFKRELPL CVQLLAYAVE  60
ASRQELKSQR TNQLEARPVL EEFIPLKDTS WPEVKENAAG KASADKANWM TSAQLWNQET  120
EGKYSPIETD TELALTVKQG ISAAGGFLPS PQKSDRNSSS CGAAFPELAL SSSHKEETVN  180
TRNSLETISR SENSGEFGNS SVAEKERVRG TATTTQTHRK PRRCWSPDLH RRFVHALHML  240
GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRSLS PSPQAAMGGA PKLVVLGGIW  300
VPPEYAAAAA HTPLYGAHTA TNTQILPSFC SAAPSVPQEI YHAVATPHPP PPRNQLHHHA  360
VHLHQFHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-14220273154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-14220273154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-14220273154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-14220273154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096177.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096177.10.0myb family transcription factor EFM
SwissprotQ9ZQ853e-86EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A2G9H0V81e-131A0A2G9H0V8_9LAMI; Uncharacterized protein
STRINGXP_007138330.11e-107(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87942229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-88G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]