PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011096138.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 509aa MW: 55200.3 Da PI: 8.4277 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 6.3e-12 | 137 | 161 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+CkF H+ XP_011096138.1 137 GEKDCAYYMQTRTCKFGDSCKFDHP 161 7889********************8 PP | |||||||
2 | zf-CCCH | 34.2 | 4.4e-11 | 187 | 213 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G rCkF+H++ XP_011096138.1 187 PGEPDCPYFLKTQRCKFGIRCKFNHPK 213 5789*********************96 PP | |||||||
3 | zf-CCCH | 35.2 | 2.1e-11 | 234 | 258 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G +CkF+H++ XP_011096138.1 234 EPPCAFYLKTGKCKFGTTCKFHHPK 258 79*********************96 PP | |||||||
4 | zf-CCCH | 39 | 1.3e-12 | 301 | 326 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++e C+f+++tG CkyG++C+++H+ XP_011096138.1 301 PGEEDCPFYLKTGSCKYGATCRYNHP 326 5899*********************9 PP | |||||||
5 | zf-CCCH | 34.4 | 3.6e-11 | 382 | 404 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++++tG+Ck+G +CkF+H+ XP_011096138.1 382 LECDYYMKTGICKFGYNCKFHHP 404 58********************9 PP | |||||||
6 | zf-CCCH | 37.3 | 4.7e-12 | 438 | 459 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p XP_011096138.1 438 CPYYMKTGTCKYGSTCKFDHPP 459 ********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.751 | 135 | 163 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-4 | 135 | 162 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.16E-5 | 136 | 162 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 137 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 141 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 186 | 213 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 186 | 214 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-8 | 188 | 213 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-5 | 191 | 215 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 192 | 213 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 231 | 259 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-5 | 231 | 258 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-6 | 234 | 258 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-9 | 234 | 258 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-4 | 236 | 256 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.61 | 300 | 328 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-7 | 300 | 327 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-10 | 302 | 326 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 303 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 306 | 325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.972 | 378 | 406 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 378 | 405 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 381 | 407 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.9E-9 | 383 | 404 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 384 | 404 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.1E-6 | 432 | 459 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.779 | 432 | 460 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 436 | 459 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-5 | 438 | 457 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 438 | 459 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MANQLYGYTY GGGGGATTLG SSSRYLSADS LSSSSALSSS LLYNPESYST RIPGISVTTP 60 THAYGPPGVD VGSTVVSTDS LYAGLKRTSS ESLYHQTLLG THNKIGQTEA WYSSNPLAKR 120 PRYESTSHLP IYPQRPGEKD CAYYMQTRTC KFGDSCKFDH PIWVPEGGIP DWKEVPPVPA 180 ESLPERPGEP DCPYFLKTQR CKFGIRCKFN HPKDRIAPPG APEDGDILPE RPSEPPCAFY 240 LKTGKCKFGT TCKFHHPKGV QIQSTGVEMG TEVKNTGDAK TGQPPFAPAL MHNSKGLPVR 300 PGEEDCPFYL KTGSCKYGAT CRYNHPDRYA AIASTLLTSP TTHFNLGVIA PTASLLSSFD 360 PRLTQTTLGL GPTIYPQRPG QLECDYYMKT GICKFGYNCK FHHPVDRSAP TASAAESLLQ 420 NVKLTLAGLP RREGAIHCPY YMKTGTCKYG STCKFDHPPP GEVMAVATSQ PGSSSARNCD 480 PTDGGGGGGS SCCSLCLFVD RLRSKWRWN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011096138.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554067.1 | 0.0 | zinc finger CCCH domain-containing protein 37 | ||||
Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A2G9HTQ0 | 0.0 | A0A2G9HTQ0_9LAMI; CCCH-type Zn-finger protein | ||||
STRING | Migut.M01488.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10640 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-178 | floral homeotic protein (HUA1) |