PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011095942.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24872 Da PI: 7.5502 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.9 | 3.5e-25 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye + XP_011095942.1 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58 79*********************************************965 PP | |||||||
2 | K-box | 53.4 | 1.1e-18 | 86 | 176 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e++ + ++e++ Lk eie Lq+ +R + G + + ++l eL+ Le++Le + ++Rs K+++++++i+ l++ke lq +nk L++k+ee XP_011095942.1 86 EKQINMDPKEEISMLKLEIEILQKGLRYISGGGGGAMTLDELNVLEKHLEIWIYHVRSAKMDIMVQEIQLLKNKEGILQAANKHLQEKIEE 176 4444556689*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.4E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-28 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.955 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.10E-41 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 4.9E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-22 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-19 | 87 | 174 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.37 | 90 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MARGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK 60 GSMQSLIERY MKCSGEVAAD DQEAKEKQIN MDPKEEISML KLEIEILQKG LRYISGGGGG 120 AMTLDELNVL EKHLEIWIYH VRSAKMDIMV QEIQLLKNKE GILQAANKHL QEKIEEQYGM 180 VEMGGMLTNI QYPAALTSTN LRSLQYPLTI PNETYDQLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-15 | 1 | 92 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 1e-15 | 1 | 92 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 1e-15 | 1 | 92 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 1e-15 | 1 | 92 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011095942.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095942.1 | 1e-161 | agamous-like MADS-box protein AGL12 isoform X1 | ||||
Swissprot | A2YQK9 | 4e-82 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 4e-82 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A2G9H1P7 | 1e-118 | A0A2G9H1P7_9LAMI; MADS box transcription factor | ||||
STRING | Migut.C01339.1.p | 1e-113 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9810 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-79 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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