PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011095859.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | G2-like | ||||||||
Protein Properties | Length: 312aa MW: 33562.8 Da PI: 6.6007 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.9 | 9.8e-33 | 43 | 97 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl XP_011095859.1 43 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 97 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-31 | 40 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.954 | 40 | 100 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.2E-23 | 43 | 98 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.4E-16 | 43 | 99 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-7 | 45 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.3E-15 | 138 | 183 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MFPRLIQPRE AILSQENIQV PNTGGYGQRG GGDPCLVLTS DPKPRLRWTA DLHERFVDAV 60 TQLGGASKAT PKAIMRTMGV KGLTLFHLKS HLQKYRLGKQ SGKEFSEASK DGSYLLDSPR 120 SSNSPQNVQA SDMNEGYEVK EALRAQMEVQ SKLHLQVEAE KHLQIRQDAE VRYIAMLERA 180 CKMLAAQILG AAVPDEDGGG FQGKGTKAPE NGSQNPLGSY PSQSANELGA PGPAEVPPNL 240 HQQLADCSTE SCLTSHESPV GLPPEGSPPG RKRAMLNVDS TNASFVWGES DVYTPDLHLV 300 QVSSHGIAGC GV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-19 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-19 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-19 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-19 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011095859.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554068.1 | 0.0 | uncharacterized protein LOC105175200 | ||||
Swissprot | Q8LAJ7 | 6e-65 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | A0A2G9GE84 | 0.0 | A0A2G9GE84_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M01478.1.p | 1e-170 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 3e-67 | G2-like family protein |
Publications ? help Back to Top | |||
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