PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011095858.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

G2-like

Protein Properties

Length: 312aa MW: 33562.8 Da PI: 6.6007

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011095858.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.9	9.8e-33	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl XP_011095858.1 43 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 97 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-31	40	98	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.954	40	100	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.2E-23	43	98	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.4E-16	43	99	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-7	45	96	IPR001005	SANT/Myb domain
Pfam	PF14379	7.3E-15	138	183	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MFPRLIQPRE AILSQENIQV PNTGGYGQRG GGDPCLVLTS DPKPRLRWTA DLHERFVDAV 60 TQLGGASKAT PKAIMRTMGV KGLTLFHLKS HLQKYRLGKQ SGKEFSEASK DGSYLLDSPR 120 SSNSPQNVQA SDMNEGYEVK EALRAQMEVQ SKLHLQVEAE KHLQIRQDAE VRYIAMLERA 180 CKMLAAQILG AAVPDEDGGG FQGKGTKAPE NGSQNPLGSY PSQSANELGA PGPAEVPPNL 240 HQQLADCSTE SCLTSHESPV GLPPEGSPPG RKRAMLNVDS TNASFVWGES DVYTPDLHLV 300 QVSSHGIAGC GV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011095858.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554068.1	0.0	uncharacterized protein LOC105175200
Swissprot	Q8LAJ7	6e-65	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A2G9GE84	0.0	A0A2G9GE84_9LAMI; Uncharacterized protein
STRING	Migut.M01478.1.p	1e-170	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9764	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	3e-67	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]