PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011095856.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family G2-like
Protein Properties Length: 337aa    MW: 36596 Da    PI: 7.1614
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011095856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.86e-3449103155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  XP_011095856.1  49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.48546106IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-3248104IPR009057Homeodomain-like
SuperFamilySSF466898.78E-1848103IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2549104IPR006447Myb domain, plants
PfamPF002491.4E-951102IPR001005SANT/Myb domain
PfamPF143791.8E-23135181IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MYQPKGVPSS SLAQSSPGVR SQPLDCGATT MDHTGGGNNV SNNPNLASKQ RLRWTHELHE  60
RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKAEKK  120
ESGDLLSSLD GSSGMQITEA LKLQMEVQKR LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ  180
RLSGVLSEAP GSGVSAPGTE DICPEADNKS DPATPAPTSE SPFLDKPAKE RAPAKSLSLD  240
ESFSSHHEPL TPDSGCHVTS PVESPSERPG KKRRGSADAA FTKPEMVLSH SILESSLSPP  300
YQQPHSLFLT REQFDHSTGL PIGNENQPLE KVSATNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011095856.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554068.10.0uncharacterized protein LOC105175200
SwissprotQ9SJW01e-130PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A2G9GE950.0A0A2G9GE95_9LAMI; Uncharacterized protein
STRINGVIT_00s0475g00040.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-107G2-like family protein