PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011095826.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 338aa    MW: 37960.1 Da    PI: 4.6949
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011095826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.4e-151561248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+W++eEd +l+  ++++G  +W++ +   g+ R++k+c++rw +yl
   XP_011095826.1 15 GPWSPEEDFKLITFIQKHGHTNWRALPIQAGLLRCGKSCRLRWINYL 61
                     89*****************************99************97 PP
2Myb_DNA-binding51.81.9e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ ++d+++  G++ W++Ia++++ gRt++++k+ w+++l
   XP_011095826.1  67 RGNFTPQEEQTIIDLHTSIGNK-WSKIASYLP-GRTDNEIKNVWNTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.383961IPR017930Myb domain
SuperFamilySSF466892.96E-2912108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-221568IPR009057Homeodomain-like
PfamPF002492.8E-141561IPR001005SANT/Myb domain
CDDcd001676.63E-101661No hitNo description
PROSITE profilePS5129424.08862116IPR017930Myb domain
SMARTSM007173.7E-1366114IPR001005SANT/Myb domain
PfamPF002491.9E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2669116IPR009057Homeodomain-like
CDDcd001674.70E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRAPCCDKS KVRSGPWSPE EDFKLITFIQ KHGHTNWRAL PIQAGLLRCG KSCRLRWINY  60
LRPDVKRGNF TPQEEQTIID LHTSIGNKWS KIASYLPGRT DNEIKNVWNT HLKKRLLQTG  120
KNAVVNCHKN EANDIDSSHT DCWASSSSAS STSTDENVEK LSIPDEAVHD SEVMMKNPND  180
DHHSTSSSHA CNVSDITCPD QTGPEDSSKS EDTINVEEGE LETRPDPDLD FWQVLDSLDP  240
LQPTTTENNV GKQENIINLS VSGESFKSEA GMSKWLELLE SELGLTSEGD CLPVDQDLMM  300
TATRQVHTEI YNNFQPHELE YGPIHEWLMP LSPSYLGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141167108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011095826.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095826.10.0transcription factor MYB14
TrEMBLA0A2G9GYM46e-87A0A2G9GYM4_9LAMI; Transcription factor, Myb superfamily
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.15e-70myb domain protein 63