PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011095780.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 416aa MW: 45217.9 Da PI: 6.8011

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011095780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.9	5.8e-06	307	345	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_011095780.1 307 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 345 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.792	296	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.38E-7	306	350	No hit	No description
SuperFamily	SSF47459	7.07E-12	306	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0037	307	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-9	310	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MADEFQVGSG NWWDTSRTRF DAGTTPPASI STTLNAIASF GWTEMEDMKS RSSMDSGPAT 60 GGSLVLQGGH DQSSAAATGG GLGNLNMQMV GLGLSSQGMD WNQPLFASQE HWRQKLYAGA 120 SPEESSVSDF KQTNRGFSLD QPQFSSQASS NDSNSITSQN LITGFQVDAA APYGMLLSDN 180 QQHYPYPSSG YCANAAELIP SWNKFPQFLR TSPPKQPPPA SGSHLHFTNN AAFWNASAPP 240 STTDGRSSFF PAIQTQNIRT APSFDEKPKI TSETRDLSTT TKKNSTEASN KRPRSNETPS 300 SLPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE YIKFLHEQVS VLSTPYMKNG 360 APIQHHQNSD KSKDPEGGRQ DLRSRGLCLV PVSSTFPMTH ETTVDFWTPT FGGSFR

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MADEFQVGSG NWWDTSRTRF DAGTTPPASI STTLNAIASF GWTEMEDMKS RSSMDSGPAT  60
GGSLVLQGGH DQSSAAATGG GLGNLNMQMV GLGLSSQGMD WNQPLFASQE HWRQKLYAGA  120
SPEESSVSDF KQTNRGFSLD QPQFSSQASS NDSNSITSQN LITGFQVDAA APYGMLLSDN  180
QQHYPYPSSG YCANAAELIP SWNKFPQFLR TSPPKQPPPA SGSHLHFTNN AAFWNASAPP  240
STTDGRSSFF PAIQTQNIRT APSFDEKPKI TSETRDLSTT TKKNSTEASN KRPRSNETPS  300
SLPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE YIKFLHEQVS VLSTPYMKNG  360
APIQHHQNSD KSKDPEGGRQ DLRSRGLCLV PVSSTFPMTH ETTVDFWTPT FGGSFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011095780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553877.1	0.0	transcription factor bHLH123
TrEMBL	A0A2Z7DA36	0.0	A0A2Z7DA36_9LAMI; Basic helix-loop-helix DNA-binding superfamily protein
STRING	Migut.M01838.1.p	1e-166	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-68	bHLH family protein