PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011095666.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 435aa MW: 49046.7 Da PI: 6.715

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011095666.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	406.8	2e-124	44	434	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.........sseelaal..... 81 +++lL++cAe vs +d ++a++l+a ls ++sp+gd+++Rl++ ft+AL+ r++r + ++a p++ n s + XP_011095666.1 44 MRQLLISCAELVSRSDVSAARRLIAILSSNSSPYGDSTERLVHQFTKALSLRINRYAATASAATPTTFLMIPNpaaastsggS------Tsnimv 132 589**************************************************5555544443332221112222223444......045555 PP GRAS 82 ................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160 +++v+P+++fs+ltaNqaIleaveg++++Hi+Dfdi++G+QWp+L+qa+a+R +pp+lRiTg g+ + e l++ XP_011095666.1 133 hdlgpinddallqssyLSLNQVTPFIRFSQLTANQAILEAVEGQQAIHILDFDIMHGVQWPPLMQAIAER-YPPPTLRITGTGH----DLEILRR 222 589999998888765444***********************************************9.999******....9** PP GRAS 161 tgerLakfAeelgvpfefnvlvak.rledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 tg+rLakfA++lg++f+f++l+ + + + ++ + p+E+l+Vn+v+ lhrll+++ l+ +L+ +k + P+v++v+e+ea+hn++ F XP_011095666.1 223 TGDRLAKFAHSLGLRFQFHPLILLtNEDPIsVASSVLLLPDETLVVNCVHYLHRLLKDRDRLHL----FLHRIKAMGPRVLTVAEREANHNHPIF 313 ****************94441333341345666888************66666666....*********************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347 +rf+eal++y+a+fdslea+lp++s+er vE+ ++grei ++va eg++rrerhe++++W+ +l+++GF++v+ls +a +qaklllr ++ s+ XP_011095666.1 314 QQRFVEALDHYAAVFDSLEATLPPNSRERLAVEQIWFGREIADIVAGEGENRRERHERFRSWEVMLRSSGFSNVRLSPFALSQAKLLLRLHYpSE 408 ******************************************************************************************* PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373 gy+++ ++s++lgW+++pL+svS+W XP_011095666.1 409 GYQLHILNDSFFLGWQNQPLFSVSSW 434 ************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.873	18	414	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.0E-122	44	434	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010014	Biological Process	meristem initiation
GO:0010223	Biological Process	secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MLGSFGSSSH EEEEEEEEPT PPNVYLHHQI QPRSFASVPP NIHMRQLLIS CAELVSRSDV 60 SAARRLIAIL SSNSSPYGDS TERLVHQFTK ALSLRINRYA ATASAATPTT FLMIPNPAAA 120 STSGGSTSNI MVHDLGPIND DALLQSSYLS LNQVTPFIRF SQLTANQAIL EAVEGQQAIH 180 ILDFDIMHGV QWPPLMQAIA ERYPPPTLRI TGTGHDLEIL RRTGDRLAKF AHSLGLRFQF 240 HPLILLTNED PISVASSVLL LPDETLVVNC VHYLHRLLKD RDRLHLFLHR IKAMGPRVLT 300 VAEREANHNH PIFQQRFVEA LDHYAAVFDS LEATLPPNSR ERLAVEQIWF GREIADIVAG 360 EGENRRERHE RFRSWEVMLR SSGFSNVRLS PFALSQAKLL LRLHYPSEGY QLHILNDSFF 420 LGWQNQPLFS VSSWN

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MLGSFGSSSH EEEEEEEEPT PPNVYLHHQI QPRSFASVPP NIHMRQLLIS CAELVSRSDV  60
SAARRLIAIL SSNSSPYGDS TERLVHQFTK ALSLRINRYA ATASAATPTT FLMIPNPAAA  120
STSGGSTSNI MVHDLGPIND DALLQSSYLS LNQVTPFIRF SQLTANQAIL EAVEGQQAIH  180
ILDFDIMHGV QWPPLMQAIA ERYPPPTLRI TGTGHDLEIL RRTGDRLAKF AHSLGLRFQF  240
HPLILLTNED PISVASSVLL LPDETLVVNC VHYLHRLLKD RDRLHLFLHR IKAMGPRVLT  300
VAEREANHNH PIFQQRFVEA LDHYAAVFDS LEATLPPNSR ERLAVEQIWF GREIADIVAG  360
EGENRRERHE RFRSWEVMLR SSGFSNVRLS PFALSQAKLL LRLHYPSEGY QLHILNDSFF  420
LGWQNQPLFS VSSWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-63	51	435	26	379	Protein SCARECROW
5b3h_A	5e-63	51	435	25	378	Protein SCARECROW
5b3h_D	5e-63	51	435	25	378	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011095666.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ070142	4e-43	KJ070142.1 Sesamum indicum clone TilSSR_41343 microsatellite Sesame_41343 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095666.1	0.0	scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-136	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A2G9GGN2	0.0	A0A2G9GGN2_9LAMI; Uncharacterized protein
STRING	XP_009765072.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11298	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-115	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]