PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011095585.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 184aa MW: 21230.8 Da PI: 7.6665 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 7e-10 | 15 | 61 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 rW+ eE +++ ++ +++ g +W++Ia+++g ++++ ++ ++ + XP_011095585.1 15 RWSWEENKRFENGLVEFPEGfpnRWEKIAARLG-TKSAAEVEQHYAVL 61 9********************************.**********9765 PP | |||||||
2 | Myb_DNA-binding | 46.4 | 9.4e-15 | 109 | 153 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+Wk+I+r++ ++R + q+ s+ qk+ XP_011095585.1 109 PWTEDEHRLFLLGLEKYGKGDWKSISRYVVLTRNPTQVASHAQKH 153 8******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.738 | 11 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-6 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.52E-11 | 15 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-8 | 15 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.97E-6 | 15 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-4 | 15 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.369 | 102 | 158 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 103 | 161 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.14E-16 | 103 | 159 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-14 | 105 | 157 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.3E-11 | 106 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.60E-9 | 109 | 154 | No hit | No description |
Pfam | PF00249 | 6.7E-12 | 109 | 153 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MVNTSGCSLE TEISRWSWEE NKRFENGLVE FPEGFPNRWE KIAARLGTKS AAEVEQHYAV 60 LLDDVTAIEA GLIESPEYVE RDAPRSSEPQ KYPKSDKKPI GVQRKAGRPW TEDEHRLFLL 120 GLEKYGKGDW KSISRYVVLT RNPTQVASHA QKHFERQEKE EQNKKRRSIF DSSIAETSMT 180 KFAN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011095585.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095585.1 | 1e-135 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-44 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0K1SBI7 | 3e-96 | A0A0K1SBI7_REHGL; MYB-related protein | ||||
STRING | Migut.M01627.1.p | 8e-97 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14988 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 6e-47 | MYB family protein |
Publications ? help Back to Top | |||
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