PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011095306.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 583aa    MW: 65442.7 Da    PI: 6.2421
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011095306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.72.3e-1312135821373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a+s+++l + ++l+++ +  +s +g+p+qRl ay++e+L ar   s++++y+al+++e +   s++ l+++++++e++P+lkf++
  XP_011095306.1 213 LKQLLIACARALSENKLDEFEKLVEHGRAAVSISGEPIQRLGAYMVEGLIARKEFSGTNIYRALRCNEPD---SKDLLSYMHILYEICPYLKFGY 304
                     689******************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI ea ++e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + l ++++rLa + e++ +p+ef++ v     +
  XP_011095306.1 305 MAANGAIAEACKNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLAAVARRLAAISEKFSIPVEFHA-VPVFAPE 398
                     *******************************************************999999**************************.6888899 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ e+L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkvv++veqe+++n+++Fl rf+eal+yysa+f+s+++++pr+ +eri
  XP_011095306.1 399 ITREMLDVRPGEALAVNFPLQLHHTPDESVDVSNPRDGLLRMVKSLSPKVVTLVEQESNTNTAPFLPRFIEALDYYSAMFESIDVTMPRDRKERI 493
                     9********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vE+++l+r+ivn++aceg+er+erhe ++kWr r+++aGF++ pls+++++ ++ llr ++ + y++ e++g+++lgWkdr+Lvs+SaW
  XP_011095306.1 494 NVEQHCLARDIVNIIACEGKERVERHELFGKWRLRFMMAGFRQFPLSSYVNSVIRGLLRCYS-EHYTLVEKDGAMLLGWKDRNLVSASAW 582
                     **********************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.256187564IPR005202Transcription factor GRAS
PfamPF035148.1E-129213582IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MDSHYLGYSV TGADLPYSSY PTVSSIPKRL FESLRFDSRN SPNSPFSTPF ETESLTVFSE  60
SQEQHSSSDN LSEATPSSNS SLDYNSYLQQ SRPSPFCRQD SLLIRSGLPS FLPNANNNHN  120
IRHALLELES ALMAPDDDEE VTTSEPALGE NTRSQTPGQR SRSWNQEAQA SHSRQSESPR  180
DSPFGSSSNQ VHIEKRRKGM EDFALHGVPP NNLKQLLIAC ARALSENKLD EFEKLVEHGR  240
AAVSISGEPI QRLGAYMVEG LIARKEFSGT NIYRALRCNE PDSKDLLSYM HILYEICPYL  300
KFGYMAANGA IAEACKNEDR IHIIDFQIAQ GTQWMTLLQA LAARPSGAPH VRITGIDDPV  360
SKYARGDGLA AVARRLAAIS EKFSIPVEFH AVPVFAPEIT REMLDVRPGE ALAVNFPLQL  420
HHTPDESVDV SNPRDGLLRM VKSLSPKVVT LVEQESNTNT APFLPRFIEA LDYYSAMFES  480
IDVTMPRDRK ERINVEQHCL ARDIVNIIAC EGKERVERHE LFGKWRLRFM MAGFRQFPLS  540
SYVNSVIRGL LRCYSEHYTL VEKDGAMLLG WKDRNLVSAS AWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-632155836375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011095306.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095306.10.0scarecrow-like protein 21
RefseqXP_020553937.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2R6QDF00.0A0A2R6QDF0_ACTCH; Chitin-inducible gibberellin-responsive protein
STRINGXP_009788119.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-178GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]