PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011095221.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRAS | ||||||||
Protein Properties | Length: 570aa MW: 65180.9 Da PI: 4.5916 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 128.5 | 7.8e-40 | 205 | 568 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl+ Aea++++++ela+ + ++ + ++p g +++R+ y+ + L+++ ++++s++ a+ +f++++P+ kf+h XP_011095221.1 205 LIHLLLAYAEAMDNQETELAEVISRHIIQKVNPVGGTTERVLYYMFQHLNKQPDY-------------LEQESSKNFYPAFMAFYQMFPYGKFAH 286 689******************************************9988776554.............333447888999999************ PP GRAS 96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakr 185 l+a aIlea+ + e +H iDfdi++G+QW+++++a+ + ++R+T v+ +e++ s+ eet++rL + A++ g+++e + + ++ XP_011095221.1 287 LVAILAILEAMPWDaEIIHLIDFDIGEGVQWAPFMEAIKYQ---HKEIRLTSVKLNEEDetnpSRWGFEETKRRLCDHADSYGLKMEVQEVGLQD 378 ***********9886888********************986...556*******9988889999999***********************96666 PP GRAS 186 ledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvk.sls..Pkvvvvveqeadhnse...sFlerflealeyysalfdsle 272 le++ +++e + ++ a n+++ l ++ + ++ e+L++ + sl +++ + +a hn + s+ + + + + +y al++s+e XP_011095221.1 379 LESMmkNMKEGEYGRKSWYAFNCHVGLPHMA--RIRNRNDVLEFLSVANnSLHhvKGIITYGDGDAWHNISsscSYTTFLDNNFTHYQALLESME 471 666622333334444889************8..33444445566665541232113589******99975544589999999************* PP GRAS 273 aklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWk 363 +++p++ e+ri +E ++++ ++ ++ e ++++ e +G+k ++se + +ak +++ + g r+ e+++++v+ W+ XP_011095221.1 472 SNFPAHLgEARIALESLFVAPLVRWGTWDRKWE------EKKQCGEFEVGVGLKGWKFSEASVVEAKEMVKSEY--GVRIGfggEKKNEMVMEWN 558 ****99978899999996666554444443333......344444555679*******************9999..666666679999******* PP GRAS 364 drpLvsvSaW 373 + p+v v++W XP_011095221.1 559 GIPMVRVCCW 568 ********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.467 | 179 | 548 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.7E-37 | 205 | 568 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MPQFGLAANA VCPFEVLIYR ARRIFMSSLG FKLKSFQKMS LCEIYQPSMI LFNNVNPFSN 60 DAAAEETLSP LFSFTENSPE ISSSMKYLET IFYDECMEFP VHGDELHASS AIHDISAADD 120 SFMDVDEFDY IFNAADVNSI PQPVNETAES GVSYCSQQFP SDDGFCSWNH DRSMEVCETF 180 MDKTNMHPPP VLPSEGMEAG NQLCLIHLLL AYAEAMDNQE TELAEVISRH IIQKVNPVGG 240 TTERVLYYMF QHLNKQPDYL EQESSKNFYP AFMAFYQMFP YGKFAHLVAI LAILEAMPWD 300 AEIIHLIDFD IGEGVQWAPF MEAIKYQHKE IRLTSVKLNE EDETNPSRWG FEETKRRLCD 360 HADSYGLKME VQEVGLQDLE SMMKNMKEGE YGRKSWYAFN CHVGLPHMAR IRNRNDVLEF 420 LSVANNSLHH VKGIITYGDG DAWHNISSSC SYTTFLDNNF THYQALLESM ESNFPAHLGE 480 ARIALESLFV APLVRWGTWD RKWEEKKQCG EFEVGVGLKG WKFSEASVVE AKEMVKSEYG 540 VRIGFGGEKK NEMVMEWNGI PMVRVCCWIS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011095221.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095221.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A2G9H773 | 0.0 | A0A2G9H773_9LAMI; Uncharacterized protein | ||||
STRING | Migut.J00120.1.p | 1e-165 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-18 | GRAS family protein |