PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011095220.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

G2-like

Protein Properties

Length: 375aa MW: 42384 Da PI: 8.2502

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011095220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.8e-32	61	114	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+++AtPk +l+lm++kgL ++hvkSHLQ+YR+ XP_011095220.1 61 PRLRWTPDLHMRFVHAVERLGGQDRATPKLVLQLMNIKGLNIAHVKSHLQMYRS 114 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-30	57	115	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.122	57	117	IPR017930	Myb domain
SuperFamily	SSF46689	1.06E-14	59	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-22	61	116	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-8	62	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MDSGEKECSK TSPSEKNDDE DESQGKDESC TVKDGGSSSN STVEESEKKP SVRPYVRSKM 60 PRLRWTPDLH MRFVHAVERL GGQDRATPKL VLQLMNIKGL NIAHVKSHLQ MYRSKKIDES 120 NQGLMDHRLF MEGGDRNVYN LSQLPLLPSF NQRQNYSNLR YGDPSWSPHG KWMHNSAPGQ 180 NTISHKTRPG FYDTITERLI GSHFYRPSAN LDLWSRTSSH TDGSTWRRNE DFKEVYRQEP 240 WLGQSRQNPI QLNSSKLIQN GVQEQRISSD AAKSNPPISS AGQTMRDTAR LKRKASGSDD 300 KLDLNLSLAL ESRNESEQKG TLITDDDDEH LSLSLFTSRP SSSNLIKKLK EDDTVVHGTD 360 QQNAIRGAST LDLTL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MDSGEKECSK TSPSEKNDDE DESQGKDESC TVKDGGSSSN STVEESEKKP SVRPYVRSKM  60
PRLRWTPDLH MRFVHAVERL GGQDRATPKL VLQLMNIKGL NIAHVKSHLQ MYRSKKIDES  120
NQGLMDHRLF MEGGDRNVYN LSQLPLLPSF NQRQNYSNLR YGDPSWSPHG KWMHNSAPGQ  180
NTISHKTRPG FYDTITERLI GSHFYRPSAN LDLWSRTSSH TDGSTWRRNE DFKEVYRQEP  240
WLGQSRQNPI QLNSSKLIQN GVQEQRISSD AAKSNPPISS AGQTMRDTAR LKRKASGSDD  300
KLDLNLSLAL ESRNESEQKG TLITDDDDEH LSLSLFTSRP SSSNLIKKLK EDDTVVHGTD  360
QQNAIRGAST LDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011095220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095220.1	0.0	uncharacterized protein LOC105174731
TrEMBL	A0A2G9H772	1e-143	A0A2G9H772_9LAMI; Uncharacterized protein
STRING	Migut.J00123.1.p	1e-118	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-58	G2-like family protein