PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011095185.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | Whirly | ||||||||
Protein Properties | Length: 239aa MW: 26544.3 Da PI: 10.179 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 204.4 | 1.4e-63 | 63 | 200 | 1 | 138 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 s+yk+kaal+ ++++ptf++l+sg +++r+G ++l++ +a++erkydW+k+q+falsatev++l++l+sk+sceffhdp++ +sn+G+vrk+l+ XP_011095185.1 63 SIYKGKAALSADPRLPTFSKLESGGYRVERRGVIMLTFWPAIGERKYDWDKRQVFALSATEVGSLISLGSKDSCEFFHDPSMLSSNAGQVRKSLS 157 7********************************************************************************************** PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 ++ + dGsG+f++lsv n+++k+n++f+vPv+ aefav+r+++ XP_011095185.1 158 IKAHVDGSGYFISLSVVNNILKTNDRFVVPVTTAEFAVMRTAF 200 *****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.5E-75 | 51 | 218 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 4.79E-67 | 57 | 236 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 7.7E-60 | 64 | 198 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MLKLSRLLLH SSRDPLSQKS LFREATGDFK LLRGITTQTV MSSAMQSSAR DGNSAVKIFA 60 PYSIYKGKAA LSADPRLPTF SKLESGGYRV ERRGVIMLTF WPAIGERKYD WDKRQVFALS 120 ATEVGSLISL GSKDSCEFFH DPSMLSSNAG QVRKSLSIKA HVDGSGYFIS LSVVNNILKT 180 NDRFVVPVTT AEFAVMRTAF TFALPHIMGW DQYTNQLPHG ANQSSPKAVH ELQSSEWDR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 1e-100 | 49 | 216 | 2 | 169 | StWhy2 |
3n1i_A | 1e-100 | 49 | 216 | 2 | 169 | protein StWhy2 |
3n1j_A | 1e-100 | 49 | 216 | 2 | 169 | Protein StWhy2 |
3n1k_A | 1e-100 | 49 | 216 | 2 | 169 | protein StWhy2 |
3n1l_A | 1e-100 | 49 | 216 | 2 | 169 | protein StWhy2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011095185.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095185.1 | 1e-178 | single-stranded DNA-bindig protein WHY2, mitochondrial isoform X2 | ||||
Swissprot | D9J034 | 1e-108 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A2G9G9W4 | 1e-135 | A0A2G9G9W4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.C01402.1.p | 1e-129 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9782 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 7e-91 | WHIRLY 2 |