PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011094733.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 35064.3 Da PI: 7.8335 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.2e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+++++++G+g +W + +++ g++R++k+c++rw++yl XP_011094733.1 14 RGPWSPEEDAHLKEYIEKHGTGgNWIALPSKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 40 | 9.2e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ ++++ G++ W+ Ia ++ gRt++++k++w++ XP_011094733.1 69 GEFSDEEDRIICSLFARIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.042 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.49E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.46E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.982 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.63E-8 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAHLKEYIE KHGTGGNWIA LPSKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRIIC SLFARIGSRW SIIAGQLPGR TDNDIKNYWN TKLKKKLLGK 120 TAPQRPQISS SLPISNYSLP DKSQFSSAYD QCSAKTSNLM TNTPFRVFSR AYHHQDPISS 180 DFNLHLQVQD GSCVGPISGG NYYDQVIKDG NSSNLLVFGG EASCSSSDGS CNTTTQITIG 240 YPTPAADHGR FLITTNNTCA ADGRAGNGCF SENPLDYSID DIKQLISTNN ICNNINPFME 300 TAHEIKTEDK ELIMYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-25 | 14 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-25 | 14 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011094733.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094733.1 | 0.0 | transcription factor RAX2 | ||||
TrEMBL | A0A2G9GXK9 | 1e-109 | A0A2G9GXK9_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | POPTR_0009s01270.1 | 3e-90 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-70 | MYB family protein |