PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094733.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 316aa    MW: 35064.3 Da    PI: 7.8335
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094733.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++++++G+g +W + +++ g++R++k+c++rw++yl
   XP_011094733.1 14 RGPWSPEEDAHLKEYIEKHGTGgNWIALPSKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

2Myb_DNA-binding409.2e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  ++++ G++ W+ Ia  ++ gRt++++k++w++
   XP_011094733.1  69 GEFSDEEDRIICSLFARIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.042962IPR017930Myb domain
SuperFamilySSF466891.49E-2711109IPR009057Homeodomain-like
SMARTSM007172.6E-111364IPR001005SANT/Myb domain
PfamPF002492.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-241569IPR009057Homeodomain-like
CDDcd001671.46E-81662No hitNo description
PROSITE profilePS5129421.98263117IPR017930Myb domain
SMARTSM007171.0E-1167115IPR001005SANT/Myb domain
PfamPF002492.8E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2370117IPR009057Homeodomain-like
CDDcd001672.63E-870111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAHLKEYIE KHGTGGNWIA LPSKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLFARIGSRW SIIAGQLPGR TDNDIKNYWN TKLKKKLLGK  120
TAPQRPQISS SLPISNYSLP DKSQFSSAYD QCSAKTSNLM TNTPFRVFSR AYHHQDPISS  180
DFNLHLQVQD GSCVGPISGG NYYDQVIKDG NSSNLLVFGG EASCSSSDGS CNTTTQITIG  240
YPTPAADHGR FLITTNNTCA ADGRAGNGCF SENPLDYSID DIKQLISTNN ICNNINPFME  300
TAHEIKTEDK ELIMYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-25141174105C-Myb DNA-Binding Domain
1msf_C3e-25141174105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094733.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094733.10.0transcription factor RAX2
TrEMBLA0A2G9GXK91e-109A0A2G9GXK9_9LAMI; Transcription factor, Myb superfamily
STRINGPOPTR_0009s01270.13e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-70MYB family protein