PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094730.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 228aa    MW: 26647.8 Da    PI: 5.4598
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094730.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-16855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEde+l+ av+ lG ++W++ a+  g++R++k+c++rw +yl
   XP_011094730.1  8 KGPWLEEEDEQLASAVAVLGERRWDALAKASGLKRSGKSCRLRWMNYL 55
                     79********************************************97 PP
2Myb_DNA-binding53.17.3e-1762106248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+ ++eE+  ++++++++G++ W++Iar+++ gRt++++k++w++yl
   XP_011094730.1  62 GNISAEEERVIIELHEKWGNK-WSRIARRLP-GRTDNEIKNYWRSYL 106
                      6779*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.024155IPR017930Myb domain
SuperFamilySSF466899.71E-285102IPR009057Homeodomain-like
SMARTSM007175.7E-14757IPR001005SANT/Myb domain
PfamPF002494.0E-15855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-21962IPR009057Homeodomain-like
CDDcd001674.71E-91055No hitNo description
PROSITE profilePS5129427.01756110IPR017930Myb domain
SMARTSM007176.6E-1660108IPR001005SANT/Myb domain
PfamPF002493.8E-1562106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2463109IPR009057Homeodomain-like
CDDcd001677.93E-1165106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MQEVELRKGP WLEEEDEQLA SAVAVLGERR WDALAKASGL KRSGKSCRLR WMNYLRPNLK  60
HGNISAEEER VIIELHEKWG NKWSRIARRL PGRTDNEIKN YWRSYLKRKH LVLEKGCLNR  120
NMNNTSGDTS LTSECGTASP CSTDHACFLF KDEIFGLSGD SSDALEVLSL TRSPYETRLT  180
EWMSNWPPDH IRKMEPKEEY YDEFYTPEWI NGDYSTNSTW EFSLWDGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-2751091104MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-26510924127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094730.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094730.11e-169transcription factor MYB27
SwissprotQ9SCP17e-56MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A2G9HVC56e-98A0A2G9HVC5_9LAMI; Uncharacterized protein
STRINGMigut.J00446.1.p1e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.13e-58myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]