PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094681.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 550aa    MW: 59688.8 Da    PI: 9.6631
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094681.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-057294123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  XP_011094681.1 72 FICEICNKGFQRDQNLQLHRRGH 94
                    89*******************88 PP
2zf-C2H212.60.00041149171123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_011094681.1 149 WKCEKCSKKYAVQSDWKAHSKTC 171
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-77194No hitNo description
Gene3DG3DSA:3.30.160.601.5E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8457294IPR007087Zinc finger, C2H2
PfamPF121716.7E-57294IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0227294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355110114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.92E-7144169No hitNo description
SMARTSM00355140149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MMSGDVFSVP SSAAPNVFPH QQLQLPNPNP KPNSNSSLPS AAKKKRNLPG TPDPDAEVIA  60
LSPKTLMATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL KQRANKDQIK KKVYICPEKT  120
CVHHDPARAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYKCDC  180
GTLFSRKDSF ITHRAFCDAL AEESARITTV GANTSLNFRN DLSHHGNLMN PQPNLQHGST  240
FSNIPHIGAA FRPEFGGLSA GNSLLGGDPH QQKPRLSLWL DHQANSQLNP NLDHHNSNLF  300
MASSSSTGLP DMIQMASSNL FGSTSSMGNY ANLSLSPLPP QGLKEEPVTN KANTNPMADS  360
LSSLYNSDSQ NVHHSSSKSS PSSAPMSATA LLQKAAQMGS TKSHPNFFGN TLGVMMSSSS  420
PSSSSTNTLS FAQNRSELHQ VFGKQQPENH APKPADGMMN FSSETSNTIS NLDHHHHSMI  480
QSTGAQISQS ANSQLNLHSG LMHGVEHSLT RDFLGMGGDG GAGGPFLPQE LAKFASMSSA  540
MGLSHFTSNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-37145213371Zinc finger protein JACKDAW
5b3h_F2e-37145213371Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094681.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094681.10.0protein indeterminate-domain 9
TrEMBLA0A2G9GP510.0A0A2G9GP51_9LAMI; Uncharacterized protein
STRINGMigut.J00556.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-101C2H2-like zinc finger protein