PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094644.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 541aa    MW: 61054 Da    PI: 9.784
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094644.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-09416463448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E ++l+d+v+++G g+W++I + +     +Rt  ++k++w+++l
   XP_011094644.1 416 WTIAEVKKLIDGVAEYGVGRWSRIKKLFFsasAHRTSVDLKDKWRNLL 463
                      9*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-13407466IPR009057Homeodomain-like
PROSITE profilePS5129415.793408467IPR017930Myb domain
SuperFamilySSF466892.94E-16410465IPR009057Homeodomain-like
SMARTSM007171.3E-9412465IPR001005SANT/Myb domain
PfamPF002492.0E-7416463IPR001005SANT/Myb domain
CDDcd116603.00E-19416464No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MISRRMPWRW KRFPAILVLD SMREVEVGYF RMQNDFCSMG EEYLLGVEFA ESITNLDYGS  60
SEGLQTSVSD SPVLASAAVT DTPWKADLFR AMEVPECQNH QLNADSSRFG EISDPCHKSE  120
TFVEEEEPSK SPTSCALQDM GKFHDISSCS FQDILDENDT SLSPSVDMLH SPKNEKSSEF  180
GGLTGQTGEI KRFLGRDALV TTSAPASHTN TFPTPKRSRK PTQRYIDELA DPLSRHSKKR  240
REVSSSKSLG VKDHKKCRLG PRAIRLPAEE SSVKAIQVPF GSLVQNECPE SCAYDMVRSS  300
DRGNLMTKSK DSRISSENQK KKDVFAGAIH LKKRDDSVSA ATQKKRDDNV AAVHLKKRED  360
NVTAVHIKKR DDNITAVSPK KPDDCDATVR QKKRDDYLTA ESSEEVNGRR KHHRLWTIAE  420
VKKLIDGVAE YGVGRWSRIK KLFFSASAHR TSVDLKDKWR NLLKASGIQS QGSRQGEKKR  480
NMAWRPLPKS ILRRVCELAT IYPYPKGRKT KIAHIHHDSP DRSTDITLGD YRRILRSING  540
N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1407414GRRKHHRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094644.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7801041e-153KR780104.1 Rehmannia glutinosa telomere repeat-binding factor like-protein (MYB28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094644.20.0uncharacterized protein LOC105174291 isoform X2
TrEMBLA0A0K1SB990.0A0A0K1SB99_REHGL; Telomere repeat-binding factor like-protein
TrEMBLA0A2G9GRF70.0A0A2G9GRF7_9LAMI; Uncharacterized protein
STRINGMigut.L01689.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.16e-26TRF-like 6