PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011094418.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 20969.7 Da PI: 6.8416 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1e-19 | 83 | 134 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp++ g r +lg++ t+eeAa a+++a+ kl+g+ XP_011094418.1 83 RYRGVRRRP-WGKFAAEIRDPVKKG--SRMWLGTYETPEEAALAYDRAAFKLRGA 134 8********.**********76643..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.62E-32 | 82 | 143 | No hit | No description |
SMART | SM00380 | 7.6E-37 | 83 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-23 | 83 | 142 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-32 | 83 | 142 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-14 | 83 | 133 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.553 | 83 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 84 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MELAERMSEF DVGLLQSIQN FLLSDSEFSL DFLWDNATPV LDDSESSTSQ MVDELLSNNS 60 DGGEVVETPP PRSVKAPPAE WKRYRGVRRR PWGKFAAEIR DPVKKGSRMW LGTYETPEEA 120 ALAYDRAAFK LRGARARVNF PNLIGSGAPE PIRVTKRCRS PQDPVIFDSA SFTEMNAGRK 180 KMKVAVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-29 | 79 | 147 | 1 | 69 | ATERF1 |
3gcc_A | 2e-29 | 79 | 147 | 1 | 69 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011094418.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094418.1 | 1e-135 | ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A2G9HT34 | 1e-63 | A0A2G9HT34_9LAMI; Uncharacterized protein | ||||
STRING | Solyc01g090310.2.1 | 1e-48 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 5e-40 | ethylene-responsive element binding factor 13 |