PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011094327.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | G2-like | ||||||||
Protein Properties | Length: 399aa MW: 44314.7 Da PI: 7.9352 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.3 | 1.8e-33 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG+ekAtPk++l+lm+++gLtl+h+kSHLQkYRl XP_011094327.1 45 KPRLKWTPDLHERFIEAVNQLGGAEKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 99 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.952 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-31 | 43 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.76E-16 | 44 | 100 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.9E-24 | 45 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-10 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.1E-23 | 141 | 188 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MYHHHHQGKN IQTSSRMSVP PERHLFLQGV NGTGDSGLVL STDAKPRLKW TPDLHERFIE 60 AVNQLGGAEK ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHGQANSG SNKAAAGDRM 120 PGANVTHMSN QHTANQTTKN MQLGEAIQMQ IEAQRRLHEQ LEVQRHLQLR IEAQGKYLQS 180 VLEKAQETLG GQPNMGTIGL EAAKIQLSDF MSKVSAQCLN SAFSGMKELS DLCLQQKQTT 240 QPTDCSFESC LTSSFEGSLR DQELHNNLMG FKPTTYRAPA EQRDNETETR TFFSTANGTS 300 EKAFLAETNS SNLSMSIGLQ SGTWNCSGNH PEERIKANAD IKFFSQKTDN NDVMKLEKQK 360 TSSELKLPLF STKLDLNTDD ENDAASSCKK LDLNGFSWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-22 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-22 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-22 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-22 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-22 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-22 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-22 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-22 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-22 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-22 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-22 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-22 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011094327.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094327.2 | 0.0 | myb-related protein 2 isoform X1 | ||||
Swissprot | Q9SQQ9 | 1e-125 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A2Z7B2B1 | 0.0 | A0A2Z7B2B1_9LAMI; Transcription factor | ||||
STRING | XP_002525443.1 | 1e-174 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2946 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-127 | G2-like family protein |
Publications ? help Back to Top | |||
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