PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094281.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 350aa    MW: 38863.7 Da    PI: 6.6408
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094281.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31079.2e-3498202199
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k ltpsdv+k++rlv+pk++ae++        +g  e++  lt+ede g+sW+++++y+++s++yvltkGW++Fvk+++L++gD+vvF +++ 
  XP_011094281.1  98 FEKPLTPSDVGKLNRLVIPKQHAEKYfplnngidSG--ENGLLLTFEDELGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVVFARHRG 190
                     99****************************987433..35679************************************************8877 PP

                     SEE..EEEEE-S CS
              B3  88 sefelvvkvfrk 99 
                     + ++l+++++r+
  XP_011094281.1 191 DAARLFIGWRRR 202
                     9999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-4190204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-3294202IPR015300DNA-binding pseudobarrel domain
CDDcd100172.45E-3296201No hitNo description
PfamPF023624.6E-3198203IPR003340B3 DNA binding domain
PROSITE profilePS5086314.91798203IPR003340B3 DNA binding domain
SMARTSM010197.9E-2898203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSINHYYSSE AHCCSSHYVM DSSFLSSSNH KPFLPNSTPA FWLSSPNHHH PIPPPTAFNF  60
NLNLNNEDDE DLVDDDRGNY APRDLELELS GIPKDPLFEK PLTPSDVGKL NRLVIPKQHA  120
EKYFPLNNGI DSGENGLLLT FEDELGKSWR FRYSYWNSSQ SYVLTKGWSR FVKEKRLDAG  180
DIVVFARHRG DAARLFIGWR RRNSGGGGGG LDNTTATQAV ASGGSGWSRA YYSGPPNYPN  240
QNQGPSSLHY QLPEFAHAGS VAAQNQTTGG SGSGSGNSKT LRLFGVNLEC QAEESDPSTP  300
VDSPMSSQGQ PHNPTPYHHH HPQYYSNHME EPVVRIHTQH TVMVEQKLSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-49942024113B3 domain-containing transcription factor NGA1
5os9_B2e-49942024113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094281.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0517284e-55KJ051728.1 Sesamum indicum clone TilSSR_22929 microsatellite Sesame_22929 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094282.10.0B3 domain-containing protein At2g36080
SwissprotQ9FNI38e-70Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2G9HGL21e-121A0A2G9HGL2_9LAMI; Uncharacterized protein
STRINGVIT_08s0007g02810.t013e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.29e-65B3 family protein