PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094246.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YA
Protein Properties Length: 317aa    MW: 34256.6 Da    PI: 9.9483
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094246.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.46.3e-30158213258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p++VNaKQy++Il+RR+kRa++e e+k+  k rkpylh SRh hA+rRpRg+gGrF
  XP_011094246.1 158 GPIFVNAKQYNGILRRRKKRAEAELENKV-LKLRKPYLHLSRHLHAMRRPRGNGGRF 213
                     59***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.4E-31155216IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115232.414156216IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.4E-26159213IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.7E-21159181IPR001289Nuclear transcription factor Y subunit A
CDDcd146860.00475172205No hitNo description
PRINTSPR006169.7E-21190213IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MTMHAVFFKE HDGIAQNSLA GWTGIGSQPA PYGGEALVQS KLAALELSAA ADCHFGGGAK  60
EPQDQPGLGK GNVTHFTLFS GECKTAENGE KTPLQTISSV QAAATMDYRG HFELGFGQPL  120
ICAKYPYAEQ CYGVYSTYGT QISGRIMLPL SMTSDGSGPI FVNAKQYNGI LRRRKKRAEA  180
ELENKVLKLR KPYLHLSRHL HAMRRPRGNG GRFLNTKEPK GSISNEKSSL KKAAAQEKQP  240
TGSQISEVLQ SDGRVNSKGR NNSSGSTSPG SEVTSGYMFS RATALDHPFR IDHLHPSFQS  300
FPNVGSMGTA GNNYLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-16159218463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176RRRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094246.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094246.10.0nuclear transcription factor Y subunit A-10
RefseqXP_020553756.10.0nuclear transcription factor Y subunit A-10
RefseqXP_020553757.10.0nuclear transcription factor Y subunit A-10
TrEMBLA0A2Z4K5F51e-136A0A2Z4K5F5_TECGR; NF-Y2 protein
STRINGMigut.L01823.1.p4e-98(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.31e-38nuclear factor Y, subunit A10