PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094102.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HB-PHD
Protein Properties Length: 719aa    MW: 82067.4 Da    PI: 9.2903
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.4e-09478522953
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     ++ +e L  +F +n  p ++ r  L+k+lgL+ ++V  WF+N R+
  XP_011094102.1 478 HNAVEKLRLVFSENELPARALRVSLSKQLGLEFEKVNKWFKNARY 522
                     567899*************************************97 PP
2PHD35.81.9e-12216267251
                     BTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSSTBSSHHHHTT CS
             PHD   2 CkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpegewlCeeCkek 51 
                     C+ C+   +  +++++lCd +C+ +fH+kCl+++l++e+++ + w+C+ Ck+k
  XP_011094102.1 216 CAKCKLqeTLPDNDIILCDgTCNCAFHQKCLDPPLSTENRD-EGWFCKFCKKK 267
                     88888844445********56**************977775.5*******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-14208270IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.4E-12211268IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.22213267IPR019787Zinc finger, PHD-finger
SMARTSM002497.8E-9215265IPR001965Zinc finger, PHD-type
CDDcd155041.83E-25215264No hitNo description
PROSITE patternPS013590216264IPR019786Zinc finger, PHD-type, conserved site
PfamPF006282.1E-9216266IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:1.10.10.602.9E-11459521IPR009057Homeodomain-like
PROSITE profilePS5007111.289467527IPR001356Homeobox domain
SMARTSM003892.3E-6469531IPR001356Homeobox domain
SuperFamilySSF466891.24E-8470531IPR009057Homeodomain-like
CDDcd000867.22E-6470530No hitNo description
PfamPF000463.6E-6478522IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MPGAAKKEAR KKLLREDDER TLESMKRELK QPKKDPSSLS KRKVSNCLHE GNGNLRLKKK  60
IVKKAIACKT KTSKKQPSLS GLKDKLTAIS AKESEKTDDR DVNPRHLKRR RRRKKRKNNV  120
ELDEACRLQR RTRYLLIKMK LEQNLIDAYS AEGWKGQSRE KIKPEKELQR AKKQILKCKL  180
GIREAIRQLD LLSSEGRIND SVVAPDGAVH HEHIVCAKCK LQETLPDNDI ILCDGTCNCA  240
FHQKCLDPPL STENRDEGWF CKFCKKKMEI LEATNAHIGT HFPMDSNWQD VFKEEAVLPD  300
DGNSTLCPEE EWPSDDSEDD DYDPDRIEQS RGESVSGSES EASDYSSSLL LSLEDEPLLA  360
SGRESNRSYD NSLELIGVDS DEINNGEVVC RPRQRAAVDY IKLYDEMFGK NAAESEQISD  420
DEDWGPTKRK RKGKENDAAS TLMTLGETDK INPEEMPSEL KEKQLINKIK RPIFRLPHNA  480
VEKLRLVFSE NELPARALRV SLSKQLGLEF EKVNKWFKNA RYLALKARKQ AEKAQVSQDV  540
GPSIQKESFS ETTKDGHPDQ MALENPKSSK ELVRRRKAHL LTSSFKIKQR RKPLLQTAES  600
NQVLTTSRDL GDDVSLKHLR EEAKEAKKKL NCKSRGGMTE AETEMERLCR IKNRVEELQQ  660
VLLQLPSWRF GKTSATNSSD VSVIYVPVAE LREKSTQCTR RGALAHIIHI NFQGNRTKC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112KRRRRR
2108116RRRRRKKRK
3110115RRRKKR
4110116RRRKKRK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094102.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553240.10.0pathogenesis-related homeodomain protein isoform X3
SwissprotP487851e-143PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A022PTS20.0A0A022PTS2_ERYGU; Uncharacterized protein
STRINGMigut.J00799.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.14e-92pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]