PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094098.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HB-PHD
Protein Properties Length: 722aa    MW: 82275.6 Da    PI: 9.214
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.4e-09481525953
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     ++ +e L  +F +n  p ++ r  L+k+lgL+ ++V  WF+N R+
  XP_011094098.1 481 HNAVEKLRLVFSENELPARALRVSLSKQLGLEFEKVNKWFKNARY 525
                     567899*************************************97 PP
2PHD383.8e-13216270251
                     BTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   2 CkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     C+ C+   +  +++++lCd +C+ +fH+kCl+++l++e++p g   w+C+ Ck+k
  XP_011094098.1 216 CAKCKLqeTLPDNDIILCDgTCNCAFHQKCLDPPLSTENIPPGdeGWFCKFCKKK 270
                     88888844445********56********************9999*******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.75E-15208273IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.4E-12211271IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.282213270IPR019787Zinc finger, PHD-finger
CDDcd155041.70E-30215267No hitNo description
SMARTSM002493.4E-9215268IPR001965Zinc finger, PHD-type
PROSITE patternPS013590216267IPR019786Zinc finger, PHD-type, conserved site
PfamPF006283.7E-10216269IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:1.10.10.602.9E-11462524IPR009057Homeodomain-like
PROSITE profilePS5007111.289470530IPR001356Homeobox domain
SMARTSM003892.3E-6472534IPR001356Homeobox domain
SuperFamilySSF466891.24E-8473534IPR009057Homeodomain-like
CDDcd000865.91E-6473533No hitNo description
PfamPF000463.6E-6481525IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MPGAAKKEAR KKLLREDDER TLESMKRELK QPKKDPSSLS KRKVSNCLHE GNGNLRLKKK  60
IVKKAIACKT KTSKKQPSLS GLKDKLTAIS AKESEKTDDR DVNPRHLKRR RRRKKRKNNV  120
ELDEACRLQR RTRYLLIKMK LEQNLIDAYS AEGWKGQSRE KIKPEKELQR AKKQILKCKL  180
GIREAIRQLD LLSSEGRIND SVVAPDGAVH HEHIVCAKCK LQETLPDNDI ILCDGTCNCA  240
FHQKCLDPPL STENIPPGDE GWFCKFCKKK MEILEATNAH IGTHFPMDSN WQDVFKEEAV  300
LPDDGNSTLC PEEEWPSDDS EDDDYDPDRI EQSRGESVSG SESEASDYSS SLLLSLEDEP  360
LLASGRESNR SYDNSLELIG VDSDEINNGE VVCRPRQRAA VDYIKLYDEM FGKNAAESEQ  420
ISDDEDWGPT KRKRKGKEND AASTLMTLGE TDKINPEEMP SELKEKQLIN KIKRPIFRLP  480
HNAVEKLRLV FSENELPARA LRVSLSKQLG LEFEKVNKWF KNARYLALKA RKQAEKAQVS  540
QDVGPSIQKE SFSETTKDGH PDQMALENPK SSKELVRRRK AHLLTSSFKI KQRRKPLLQT  600
AESNQVLTTS RDLGDDVSLK HLREEAKEAK KKLNCKSRGG MTEAETEMER LCRIKNRVEE  660
LQQVLLQLPS WRFGKTSATN SSDVSVIYVP VAELREKSTQ CTRRGALAHI IHINFQGNRT  720
KC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112KRRRRR
2108116RRRRRKKRK
3110115RRRKKR
4110116RRRKKRK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094098.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553235.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_020553237.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_020553238.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-149PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A022PTS20.0A0A022PTS2_ERYGU; Uncharacterized protein
STRINGMigut.J00799.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.22e-98pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]