PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093932.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | SBP | ||||||||
Protein Properties | Length: 416aa MW: 45801.1 Da PI: 7.001 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.8 | 2e-40 | 139 | 216 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dl++ak+yhrrh++Ce hsk+p+v+vsg+e rfCqqCsrfh+lsefD++krsCrrrL++hn+rrr+ q+ XP_011093932.1 139 CCQVEGCNLDLKSAKDYHRRHRICESHSKSPKVIVSGMELRFCQQCSRFHDLSEFDDKKRSCRRRLSDHNARRRRMQP 216 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.6E-35 | 133 | 201 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.188 | 137 | 214 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.18E-38 | 138 | 219 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-32 | 140 | 213 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MERNSVSSSG LEWENLAVEI AEPVGFSISM SSSGSNGPLC GDISASALES TKETMDCFGR 60 LGSLPQYDDV IRMQNIREPI SSPSAGSGEP MIGLRLGRPK ELGDSFPTSS TKTSTSSLPT 120 SLTPIKRSRA SYQNMQNPCC QVEGCNLDLK SAKDYHRRHR ICESHSKSPK VIVSGMELRF 180 CQQCSRFHDL SEFDDKKRSC RRRLSDHNAR RRRMQPEAVQ LSSSGLSSAL YDRRVQHVLS 240 GLPIVSLPNS TWESASSVML GQAGDSLIRP SKVGTFDGTL CFPSNDIYCS DANRRVDPER 300 LPSIHSSNHG VLDQCLHLPT NNSPIAPNML SAHSLLSSNS WSLNDVASNS MESLTHGNYN 360 PLLRSSQLES HHLSLFQSNN IPSDQEPLVH SVTLQEYQLF KAPYDSGDFF SSQTNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-29 | 140 | 213 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 212 | KKRSCRRRLSDHNARRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093932.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093932.1 | 0.0 | squamosa promoter-binding-like protein 12 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13644 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 3e-45 | squamosa promoter binding protein-like 2 |