PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093751.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 861aa MW: 94803.7 Da PI: 6.8303 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.1 | 4.9e-06 | 455 | 476 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + Cr++++ G C+ Gd+CkF+H+ XP_011093751.1 455 AYCRHYLQ-GRCHEGDKCKFSHD 476 57******.*************7 PP | |||||||
2 | zf-CCCH | 21.5 | 4e-07 | 510 | 530 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++a +G+C++G+ C F+H XP_011093751.1 510 PCNNYASNGFCSRGSDCLFSH 530 7******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 16.014 | 451 | 478 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 451 | 476 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-4 | 452 | 477 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 456 | 476 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.38 | 480 | 504 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.048 | 480 | 506 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.685 | 505 | 533 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.055 | 508 | 532 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-5 | 509 | 533 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-5 | 510 | 530 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-4 | 510 | 531 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 861 aa Download sequence Send to blast |
MDDSSQLQTL TRNPSEATFS FPPHRRRPLR SRTYCTLIEI LSHCRTNFHQ HQTQVDTGDV 60 ESRRVSEENR SIACQEVNPI DVLVLIPSSE ESKDPLAQGA SVGKNKEHVG FKDGGFDGKQ 120 EALPDLDHTR LITDCVQEVI PENRNNMGDF VVVENQTSDS AIWTTEDQDN GNSFRDIVTL 180 EQLEVDQDFS IQDFSEVLDG CFGMDMAIES SKVGEDHQEN VTMEENISKE AEHDLKLKEM 240 ELENLIYNSG VVESPCHIND DAEIEEGEIS GEAGIADASL DALSENAVSL GERTTEMVHG 300 SKDSFDKEEF ICNYGDRKRG RHEMSDPLLV NLVSSDSNCR EVESRTSAGK MQDCHSQSVF 360 NDNNMKTQRS GSVTPSENPT PCGRNVEENA AENRTSAATE KDGSASKKKR KHGPLTKERR 420 AKKKKKERIK RAEKNRKLGV KRLKLQPVLK PKTKAYCRHY LQGRCHEGDK CKFSHDTVPL 480 TKSKPCGHFA RHSCMKGDDC PFDHQLSKYP CNNYASNGFC SRGSDCLFSH EIPAKQSFSM 540 APNVSKSELT SAHHIVPDKG GSVAISKMTK PEVKFPSPLN NSNSSKHTDT SGQKIDAKFC 600 SVEDSSGKSA ELLAPKPVPR PAGQAPKGVS FLLNGGMRLG DTSKHKQDGS CVKRSDGVDA 660 ASNTILKVPG SFNKTNEIFE GLAPRKPRGI NFLSFAQPRA DDSSSKALPD FIANRKNETG 720 KSVIDDMVKD KLTWSLPASV RTLKVNQQMN QNANSLARGL PEEINGTPLG VHFDTAFSLV 780 KEGPSTPSMI QDSTKKRFLS FGGSWDRSTG GENVDLFSPF KTSLLANSPS SVQKAVQSTL 840 AFAAKFDPDV KIGSSLHQQG R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 408 | 425 | KRKHGPLTKERRAKKKKK |
2 | 418 | 426 | RRAKKKKKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093751.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093751.1 | 0.0 | uncharacterized protein LOC105173629 | ||||
TrEMBL | A0A2G9HZN3 | 0.0 | A0A2G9HZN3_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7740 | 17 | 20 |