PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093726.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 308aa    MW: 33466.7 Da    PI: 10.0842
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093726.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.83.6e-19173206134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+ C+ttkTplWR+gp g+k+LCnaCG+++rk +
  XP_011093726.1 173 CADCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 206
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-19167232IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-13167209No hitNo description
PROSITE profilePS5011412.703167203IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-15171206IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.46E-11172200No hitNo description
PfamPF003207.3E-17173206IPR000679Zinc finger, GATA-type
PROSITE patternPS003440173198IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNINSSPSPS PTDQISDSID HDHQFLQPFA PNQYHNQVVS SSPSSSASSS PIFFSSAQDH  60
TGFYHHQLYH PHPQEDDSTT YGYRGGSSCD EMKNKVNSGL KLTLWKNKDE GLAKKDIPVK  120
WMSTKMRVMQ KMKNTDRISV SSFKQLLQPS SSMETDLSSN SSSYNSNSPI RVCADCNTTK  180
TPLWRSGPKG PKSLCNACGI RQRKARRAMA AAAANGMVVA NARPATLKIK VQHKEMKTTG  240
KNVSGGLKKG CKIASAGSSS SSSSSKASRL EEFLINLSNN LAVHRVFPED EKDAAILLMA  300
LSSGLVHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093726.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0415365e-60KJ041536.1 Sesamum indicum clone TilSSR_12737 microsatellite Sesame_12737 sequence.
GenBankKJ0539555e-60KJ053955.1 Sesamum indicum clone TilSSR_25156 microsatellite Sesame_25156 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093726.10.0putative GATA transcription factor 22
TrEMBLA0A2G9GKC71e-84A0A2G9GKC7_9LAMI; Uncharacterized protein
STRINGMigut.J00606.1.p5e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.16e-28cytokinin-responsive gata factor 1