PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011093711.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 827aa MW: 93903.5 Da PI: 7.084

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011093711.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.6	2.5e-24	79	165	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA++vGF +++++s++sk++g++++ + Cs+ g++++++++ +tr+ +t+Cka++++kk+ +gkw ++++++eHnHe++p XP_011093711.1 79 SFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRQSSTS----ISTRSCPKTDCKASMHIKKRPEGKWFIYSFVEEHNHEISP 165 5**************************************998877....999********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-22	79	165	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.2E-24	247	338	IPR018289	MULE transposase domain
Pfam	PF04434	4.1E-5	527	561	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.47	527	563	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-7	538	565	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MEIDLKLPSG KDGKLSTGEL HHDNDDDDNN DNEGNVADNV IVGGGDGVNV NVFDGNKSGI 60 SGYMPQNGME FETKEDAYSF YREYARSVGF GITIKASRRS KKSGKFIDIK IACSRFGSKR 120 QSSTSISTRS CPKTDCKASM HIKKRPEGKW FIYSFVEEHN HEISPDDFYN AVRGRKNTNP 180 NALCQKKGLQ LVLDEKAVQL LLDYFMHMQA EAPGFYYVTD FDKEGCMRNV FWVDLKGRHD 240 YVPFSDVVFF DTHYIRSEYN IPFVPVIGVN HHFQFILLGC AVIGEETQST LVWLMRSWLR 300 AVGGCSPKVV ITDNDKSLTE ATLEVFPDAS HYFCPWHVFG GVIPNLSHKL SGVEVFLAKL 360 KKCTYRSMTD EEFEKRWQKM VSKFDLGDDK WIQSLYEDRR KWMPTYMRDV FLGGFCTVER 420 SQSVASFFDK YLQKETTVEE FIDQYKLFLH ESCEEERKAE IEAQHAQPTL ISHSPFEKQM 480 SKLYTYTIYT KFQAEVSGIV ACTVGKEGED ERTITFRVDD LEMKQSFTVS WNKGKSDVCC 540 LCHLFEYSGF LCRHALSVLQ LLGISTVPSK YILKRWTRKA KIRDTTCLAS TNIIFRVQRL 600 NDLCKLAIRL GEEGSLSGEA YQVASHALEE ALERCAVMNN SMKCVLETNK TASQVLSNVG 660 QKEDNSIMKA LKTKKVPKKR KVQAEAESLS IRIQDSSQDV EQLNQRSLSL HDSFISPQDL 720 QGMELGTRIP VINGYYGVQQ GSQALGNLNS ISSLQDYYSD QPLMQGVLGN MNAVSARVNH 780 HTTQQNLQGL LQGQFSFRVS PLEGCFQLRD GLRNETSVST MSKHLRD

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MEIDLKLPSG KDGKLSTGEL HHDNDDDDNN DNEGNVADNV IVGGGDGVNV NVFDGNKSGI  60
SGYMPQNGME FETKEDAYSF YREYARSVGF GITIKASRRS KKSGKFIDIK IACSRFGSKR  120
QSSTSISTRS CPKTDCKASM HIKKRPEGKW FIYSFVEEHN HEISPDDFYN AVRGRKNTNP  180
NALCQKKGLQ LVLDEKAVQL LLDYFMHMQA EAPGFYYVTD FDKEGCMRNV FWVDLKGRHD  240
YVPFSDVVFF DTHYIRSEYN IPFVPVIGVN HHFQFILLGC AVIGEETQST LVWLMRSWLR  300
AVGGCSPKVV ITDNDKSLTE ATLEVFPDAS HYFCPWHVFG GVIPNLSHKL SGVEVFLAKL  360
KKCTYRSMTD EEFEKRWQKM VSKFDLGDDK WIQSLYEDRR KWMPTYMRDV FLGGFCTVER  420
SQSVASFFDK YLQKETTVEE FIDQYKLFLH ESCEEERKAE IEAQHAQPTL ISHSPFEKQM  480
SKLYTYTIYT KFQAEVSGIV ACTVGKEGED ERTITFRVDD LEMKQSFTVS WNKGKSDVCC  540
LCHLFEYSGF LCRHALSVLQ LLGISTVPSK YILKRWTRKA KIRDTTCLAS TNIIFRVQRL  600
NDLCKLAIRL GEEGSLSGEA YQVASHALEE ALERCAVMNN SMKCVLETNK TASQVLSNVG  660
QKEDNSIMKA LKTKKVPKKR KVQAEAESLS IRIQDSSQDV EQLNQRSLSL HDSFISPQDL  720
QGMELGTRIP VINGYYGVQQ GSQALGNLNS ISSLQDYYSD QPLMQGVLGN MNAVSARVNH  780
HTTQQNLQGL LQGQFSFRVS PLEGCFQLRD GLRNETSVST MSKHLRD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	674	680	KVPKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011093711.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093711.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X2
Refseq	XP_020553553.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X2
TrEMBL	A0A2G9GPS7	0.0	A0A2G9GPS7_9LAMI; Uncharacterized protein
STRING	Migut.J00594.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2