PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011093403.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 372aa MW: 41109.1 Da PI: 9.9076

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011093403.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	311	330	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F ++ L+ H++++ XP_011093403.1 311 CSQCGKQF-KPEKLHAHMKSC 330 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	7.8E-43	14	210	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MEAAESGVEV RRLHIVYFLS RKGRLEHPHL IRLHRLSSNG VRLRDVKRWL GELRGKDMPE 60 SFAWSYKRRY KKGYVWQDLL DDDLITPISD NEYVLQGSEI SSTNNTEIPM QKEQSSVQGA 120 QKTNPKPQPT EENQSPSSSS SPSETSILTD DSAKTQLQMH SHTFAMQEAN NKRRVGKVKN 180 VMINQKLSNV GTTSAASRTI ISDDHRTKSK NGASSNGNIL RSLISCGAVD TDDSALRIIM 240 CSSDNRNVHN SAQICKREKI TLGTSYWTPN HGSNCSRSCD GAKDSATKKG QFKNQGGSCP 300 AAYKPIKGPN CSQCGKQFKP EKLHAHMKSC KGMKALSRTS NPPVSASDAE ETSKISTQPC 360 NKDSVSAHFL SH

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MEAAESGVEV RRLHIVYFLS RKGRLEHPHL IRLHRLSSNG VRLRDVKRWL GELRGKDMPE  60
SFAWSYKRRY KKGYVWQDLL DDDLITPISD NEYVLQGSEI SSTNNTEIPM QKEQSSVQGA  120
QKTNPKPQPT EENQSPSSSS SPSETSILTD DSAKTQLQMH SHTFAMQEAN NKRRVGKVKN  180
VMINQKLSNV GTTSAASRTI ISDDHRTKSK NGASSNGNIL RSLISCGAVD TDDSALRIIM  240
CSSDNRNVHN SAQICKREKI TLGTSYWTPN HGSNCSRSCD GAKDSATKKG QFKNQGGSCP  300
AAYKPIKGPN CSQCGKQFKP EKLHAHMKSC KGMKALSRTS NPPVSASDAE ETSKISTQPC  360
NKDSVSAHFL SH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011093403.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093403.1	0.0	protein UPSTREAM OF FLC-like
TrEMBL	A0A1U7XPA1	1e-105	A0A1U7XPA1_NICSY; protein UPSTREAM OF FLC isoform X3
STRING	XP_009792716.1	1e-105	(Nicotiana sylvestris)
STRING	Migut.N01652.1.p	1e-106	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5206	13	15