PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093328.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 27591.2 Da PI: 5.8095 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 85 | 135 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++ge XP_011093328.1 85 TYRGVRRRS-WGKWVCEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGE 135 59****887.**********843...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.1E-36 | 85 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-22 | 85 | 143 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.868 | 85 | 142 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-32 | 85 | 143 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-14 | 86 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.25E-31 | 86 | 144 | No hit | No description |
PRINTS | PR00367 | 1.2E-10 | 86 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDQEIILETL TQHHHSLSPT TTSSGGSSWT PPASTATSSS TSSPSAADRK QATTSLKEWS 60 KAQKSTKRAQ AEEDDKGAAA EKQTTYRGVR RRSWGKWVCE IREPRKKSRI WLGTYPTAEM 120 AARAHDVAAL AIKGESAYLN FPHLAHQLPR PASTTPKDIQ AASAKAAAYT FISAEAEPSS 180 HSSTNLELEN IEESSTSASM AHDDDTFFDL PDLSLDSTDH SSPYCYNFAS SWQLAGADVG 240 FRLEDPFPWE CY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 72 | 143 | 2 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093328.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093328.1 | 0.0 | ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q8LBQ7 | 1e-58 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A2G9GT81 | 2e-99 | A0A2G9GT81_9LAMI; Uncharacterized protein | ||||
STRING | XP_009771308.1 | 2e-76 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 3e-56 | ERF family protein |
Publications ? help Back to Top | |||
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