PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093325.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 316aa    MW: 35910.2 Da    PI: 5.1325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.6e-142570146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk++G+++W++I ++  ++Rt+k+c++rw +
   XP_011093325.1 25 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLHRTGKSCRLRWVN 70
                     79*************************888779***********87 PP

2Myb_DNA-binding44.82.8e-1481120344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++++eE+   +d+ +q+G++ W++Ia +++ gRt++++k++w
   XP_011093325.1  81 KFSAEEERTVIDLQAQFGNK-WARIATYLP-GRTDNDVKNFW 120
                      79******************.*********.*********** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.5232276IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-212273IPR009057Homeodomain-like
SuperFamilySSF466891.27E-2823120IPR009057Homeodomain-like
SMARTSM007179.0E-132474IPR001005SANT/Myb domain
CDDcd001671.82E-122772No hitNo description
PfamPF139215.4E-122878No hitNo description
Gene3DG3DSA:1.10.10.602.6E-1874126IPR009057Homeodomain-like
PROSITE profilePS5129417.11477128IPR017930Myb domain
SMARTSM007175.3E-1278126IPR001005SANT/Myb domain
PfamPF002492.2E-1281120IPR001005SANT/Myb domain
CDDcd001671.84E-1081120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSGVVRAMEG KRRMVLYDEV GEIKKGPWKA EEDEVLINHV KKYGPRDWSS IRSKGLLHRT  60
GKSCRLRWVN KLRPDLKTGV KFSAEEERTV IDLQAQFGNK WARIATYLPG RTDNDVKNFW  120
SSRQKRLARI LQTSSASSST NSHKSTVQVQ APAFLDISPV EAPKFSSSTD EESVAKSQTC  180
SSSHIDDNDT IKMVLFQDLV YPSTLTHEQN TLQLDYNTSQ KKQFPEQESH LSFPQIPQLQ  240
PDFSLALESQ DFVNRLGDPN FLDEFEPPCF VPDRSCQIPG RAESNDTVDL DTFISDFPPI  300
DLFDDIEPLP SPSEWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-282212624126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093325.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093325.10.0transcription factor MYB63-like
TrEMBLA0A2Z7BAP71e-138A0A2Z7BAP7_9LAMI; Uncharacterized protein
STRINGEOX964021e-116(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.17e-78MYB family protein