PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 35910.2 Da PI: 5.1325 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.6e-14 | 25 | 70 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l++ vk++G+++W++I ++ ++Rt+k+c++rw + XP_011093325.1 25 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLHRTGKSCRLRWVN 70 79*************************888779***********87 PP | |||||||
2 | Myb_DNA-binding | 44.8 | 2.8e-14 | 81 | 120 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++eE+ +d+ +q+G++ W++Ia +++ gRt++++k++w XP_011093325.1 81 KFSAEEERTVIDLQAQFGNK-WARIATYLP-GRTDNDVKNFW 120 79******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.523 | 22 | 76 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-21 | 22 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.27E-28 | 23 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-13 | 24 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.82E-12 | 27 | 72 | No hit | No description |
Pfam | PF13921 | 5.4E-12 | 28 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-18 | 74 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.114 | 77 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-12 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-12 | 81 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.84E-10 | 81 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MSGVVRAMEG KRRMVLYDEV GEIKKGPWKA EEDEVLINHV KKYGPRDWSS IRSKGLLHRT 60 GKSCRLRWVN KLRPDLKTGV KFSAEEERTV IDLQAQFGNK WARIATYLPG RTDNDVKNFW 120 SSRQKRLARI LQTSSASSST NSHKSTVQVQ APAFLDISPV EAPKFSSSTD EESVAKSQTC 180 SSSHIDDNDT IKMVLFQDLV YPSTLTHEQN TLQLDYNTSQ KKQFPEQESH LSFPQIPQLQ 240 PDFSLALESQ DFVNRLGDPN FLDEFEPPCF VPDRSCQIPG RAESNDTVDL DTFISDFPPI 300 DLFDDIEPLP SPSEWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-28 | 22 | 126 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093325.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093325.1 | 0.0 | transcription factor MYB63-like | ||||
TrEMBL | A0A2Z7BAP7 | 1e-138 | A0A2Z7BAP7_9LAMI; Uncharacterized protein | ||||
STRING | EOX96402 | 1e-116 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4207 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 7e-78 | MYB family protein |