PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011093313.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 784aa MW: 85003.5 Da PI: 5.2814

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011093313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	331.1	2.1e-101	424	783	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +++L+++Ae v++g+ +la+ +Larl+++ sp g+p+ R+a+y +eAL+ l+ + ++l + ++s+ s + ++ a+k fse+sP+++f+++ XP_011093313.1 424 IDQLYKAAELVQTGNPALARGILARLNHQLSPIGKPFYRAAFYCKEALQLLLQTNNNGLNPSTASSPFS---LIFKIGAYKSFSEISPLIQFANF 515 689*************************************************888888766666666...******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 t+Nqa+le +eg +r+Hi+Dfdi++G+QW++L+q+La R++g+p l+iT+++s ++++ el+ t+e+L +fA+ +++ fef+v+ ++l++ XP_011093313.1 516 TCNQALLEVLEGFDRIHIVDFDIGYGGQWASLMQELALRNGGAPLLKITALVSTLTHDQLELSLTRENLLQFASDINIGFEFEVISIDSLDSG-S 609 *************************************************9999***********************977777776.5 PP GRAS 192 eeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++L +v ++E +aVnl + ++s++ vL++vk+lsP++vv v++ +d+++ +F++++++al+ ys l++sl+a + ++ +k XP_011093313.1 610 WSLpfHVLENEGVAVNLPAGCLANY--QLSVPF----VLRFVKQLSPRIVVSVDRGCDRSDLPFANHIIHALQSYSNLLESLDAV-NVNMDALQK 697 666337777*****9776665..566666....*****************************************665.4577999 PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er+ll++ i+++v+ + ++ e+ ++Wr + ++GF+pv++s+++++qa++++++++++g++ve+++ slvl+W++++Lvs+S+Wr XP_011093313.1 698 IERFLLQPGIEKIVMGRFRS----PEKSQHWRTLFLSSGFSPVTFSNFTESQAECVVKRTPVRGFQVEKRQSSLVLCWQQKELVSASVWR 783 ************998877....9**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.214	397	763	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.4E-99	424	783	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MKGMPFPFDF EGKGVLELEL VVKSKAFDIS ESNPAEISSY LFEKNCFVNN SFGEPTSVLD 60 SARISSLPTS SSTLSSSLGG GGGSAGGGAA STDTGGVAAV SDTNPSPKWQ QDSNTATSSN 120 AGGADSELLP VPPSLEIGTA GGRDGRNTEK CAMEDWENVL SESAAASPSQ EQSIFRWIMG 180 DVEDPGMGSL NKVLQIGGGG GSTPSEYDFS GGFGVVDQSF AGDQFGENSM PTVSSFSNNS 240 RSSVEKIELA PNPVTSNLPS NFKFSPNSQN IMYPSSFSNN LGAIDLHYPA AFDSSAEMKP 300 PIFNPQLLIN QHQAHHAQNP SFFLPFSYAQ QQEQSFTVPP QAKRHNPGGP IGGGLEARGP 360 IPKGSLLDTG QQEMFLGRQQ LHHQLQMLPH YLQQRPSGPG PKPKIGSGDE LGHSHQQQLQ 420 QSIIDQLYKA AELVQTGNPA LARGILARLN HQLSPIGKPF YRAAFYCKEA LQLLLQTNNN 480 GLNPSTASSP FSLIFKIGAY KSFSEISPLI QFANFTCNQA LLEVLEGFDR IHIVDFDIGY 540 GGQWASLMQE LALRNGGAPL LKITALVSTL THDQLELSLT RENLLQFASD INIGFEFEVI 600 SIDSLDSGSW SLPFHVLENE GVAVNLPAGC LANYQLSVPF VLRFVKQLSP RIVVSVDRGC 660 DRSDLPFANH IIHALQSYSN LLESLDAVNV NMDALQKIER FLLQPGIEKI VMGRFRSPEK 720 SQHWRTLFLS SGFSPVTFSN FTESQAECVV KRTPVRGFQV EKRQSSLVLC WQQKELVSAS 780 VWRC

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MKGMPFPFDF EGKGVLELEL VVKSKAFDIS ESNPAEISSY LFEKNCFVNN SFGEPTSVLD  60
SARISSLPTS SSTLSSSLGG GGGSAGGGAA STDTGGVAAV SDTNPSPKWQ QDSNTATSSN  120
AGGADSELLP VPPSLEIGTA GGRDGRNTEK CAMEDWENVL SESAAASPSQ EQSIFRWIMG  180
DVEDPGMGSL NKVLQIGGGG GSTPSEYDFS GGFGVVDQSF AGDQFGENSM PTVSSFSNNS  240
RSSVEKIELA PNPVTSNLPS NFKFSPNSQN IMYPSSFSNN LGAIDLHYPA AFDSSAEMKP  300
PIFNPQLLIN QHQAHHAQNP SFFLPFSYAQ QQEQSFTVPP QAKRHNPGGP IGGGLEARGP  360
IPKGSLLDTG QQEMFLGRQQ LHHQLQMLPH YLQQRPSGPG PKPKIGSGDE LGHSHQQQLQ  420
QSIIDQLYKA AELVQTGNPA LARGILARLN HQLSPIGKPF YRAAFYCKEA LQLLLQTNNN  480
GLNPSTASSP FSLIFKIGAY KSFSEISPLI QFANFTCNQA LLEVLEGFDR IHIVDFDIGY  540
GGQWASLMQE LALRNGGAPL LKITALVSTL THDQLELSLT RENLLQFASD INIGFEFEVI  600
SIDSLDSGSW SLPFHVLENE GVAVNLPAGC LANYQLSVPF VLRFVKQLSP RIVVSVDRGC  660
DRSDLPFANH IIHALQSYSN LLESLDAVNV NMDALQKIER FLLQPGIEKI VMGRFRSPEK  720
SQHWRTLFLS SGFSPVTFSN FTESQAECVV KRTPVRGFQV EKRQSSLVLC WQQKELVSAS  780
VWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-33	438	783	18	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011093313.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093313.1	0.0	scarecrow-like protein 27
Refseq	XP_011093314.1	0.0	scarecrow-like protein 27
TrEMBL	A0A2G9GWL5	0.0	A0A2G9GWL5_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400066799	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6253	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-137	GRAS family protein