PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011093166.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HD-ZIP

Protein Properties

Length: 835aa MW: 91188.4 Da PI: 6.1877

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011093166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.7e-21	139	194	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k XP_011093166.1 139 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 194 688999***********************************************999 PP
2	START	204.3	5e-64	344	570	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 ela++a++elvk+a+ +e++W +s e++n +e++++f++ + +ea+r++g+v+ ++ lve+l+d++ +W e+++ + XP_011093166.1 344 ELALAAMDELVKMAQTDEALWLRSFeggrEILNHEEYVRTFST--PcigmkpngFVTEASRETGMVIINSLALVETLMDSN-KWAEMFPciiaRT 435 5899*******************9***********66..3459999999**********************.********* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtw 166 +t++vis+g galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + s+ + +++lpSg+++++++ng+skvtw XP_011093166.1 436 ATTDVISNGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGgSPTYPNCRRLPSGCVVQDMPNGYSKVTW 530 ***********************************************************999************************* PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 veh++++++++h l+rsl++ g+ +ga++wvatlqrqce+ XP_011093166.1 531 VEHAEYDESVVHHLYRSLISAGMGFGAQRWVATLQRQCEC 570 ************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.03E-20	122	196	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.6E-22	125	196	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	136	196	IPR001356	Homeobox domain
SMART	SM00389	9.9E-18	137	200	IPR001356	Homeobox domain
CDD	cd00086	1.36E-18	138	196	No hit	No description
Pfam	PF00046	1.4E-18	139	194	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	171	194	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.716	335	573	IPR002913	START domain
SuperFamily	SSF55961	1.65E-33	337	570	No hit	No description
CDD	cd08875	2.52E-124	339	569	No hit	No description
SMART	SM00234	1.0E-49	344	570	IPR002913	START domain
Pfam	PF01852	2.1E-55	344	570	IPR002913	START domain
SuperFamily	SSF55961	3.3E-23	598	828	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MNFGDFLDHN NSCGGGGARI VADLPYSNSS SNNNTIGTNP SGNINSNNDM PTGAIAQPRL 60 VPQPLSTKPM FNSPGLSLAL QQTSMEGQGE MARMGENYET SNVGGRRSRD EEHESRSGSD 120 NMEGASGDDQ DASDKPPRKK RYHRHTPQQI QELEALFKEC PHPDEKQRLE LSKRLCLETR 180 QVKFWFQNRR TQMKTQLERH ENSILRQEND KLRAENMSMR EAMRNPICTN CGGPAMIGEI 240 SLEEQHLRIE NARLKDELDR VCALAGKFLG RPVSSLAAPP MPNSSLELGV GSNGFGGGLN 300 TVIPTTLPLG PTDYGSSLPV MPPTKATMNI APIERSLERS MYLELALAAM DELVKMAQTD 360 EALWLRSFEG GREILNHEEY VRTFSTPCIG MKPNGFVTEA SRETGMVIIN SLALVETLMD 420 SNKWAEMFPC IIARTATTDV ISNGMGGTRN GALQLMHAEL QVLSPLVPVR EVNFLRFCKQ 480 HAEGVWAVVD VSIDTIRETS GGSPTYPNCR RLPSGCVVQD MPNGYSKVTW VEHAEYDESV 540 VHHLYRSLIS AGMGFGAQRW VATLQRQCEC LAILMSSNVP TRDHTAITAG GRRSMLKLAQ 600 RMTNNFFAGV CASTVHKWNK LRTENVDEDV RVMTRKSVDD PGEPPGIVLS AATSVWLPVT 660 PQRLFDFLRN EHLRSEWDIL SNGGPMQEMA HIAKGQDHGN CVSLLRASAM NANQSSMLIL 720 QETCIDAAGS LVVYAPVDIP AMHVVMNGGD SAYVALLPSG FAIVPDGPGS RGGDDGPTSN 780 GGPGHRVSGS LLTVAFQILV NSLPTAKLTV ESVETVNNLI SCTVQKIKAA LQCES

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MNFGDFLDHN NSCGGGGARI VADLPYSNSS SNNNTIGTNP SGNINSNNDM PTGAIAQPRL  60
VPQPLSTKPM FNSPGLSLAL QQTSMEGQGE MARMGENYET SNVGGRRSRD EEHESRSGSD  120
NMEGASGDDQ DASDKPPRKK RYHRHTPQQI QELEALFKEC PHPDEKQRLE LSKRLCLETR  180
QVKFWFQNRR TQMKTQLERH ENSILRQEND KLRAENMSMR EAMRNPICTN CGGPAMIGEI  240
SLEEQHLRIE NARLKDELDR VCALAGKFLG RPVSSLAAPP MPNSSLELGV GSNGFGGGLN  300
TVIPTTLPLG PTDYGSSLPV MPPTKATMNI APIERSLERS MYLELALAAM DELVKMAQTD  360
EALWLRSFEG GREILNHEEY VRTFSTPCIG MKPNGFVTEA SRETGMVIIN SLALVETLMD  420
SNKWAEMFPC IIARTATTDV ISNGMGGTRN GALQLMHAEL QVLSPLVPVR EVNFLRFCKQ  480
HAEGVWAVVD VSIDTIRETS GGSPTYPNCR RLPSGCVVQD MPNGYSKVTW VEHAEYDESV  540
VHHLYRSLIS AGMGFGAQRW VATLQRQCEC LAILMSSNVP TRDHTAITAG GRRSMLKLAQ  600
RMTNNFFAGV CASTVHKWNK LRTENVDEDV RVMTRKSVDD PGEPPGIVLS AATSVWLPVT  660
PQRLFDFLRN EHLRSEWDIL SNGGPMQEMA HIAKGQDHGN CVSLLRASAM NANQSSMLIL  720
QETCIDAAGS LVVYAPVDIP AMHVVMNGGD SAYVALLPSG FAIVPDGPGS RGGDDGPTSN  780
GGPGHRVSGS LLTVAFQILV NSLPTAKLTV ESVETVNNLI SCTVQKIKAA LQCES

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011093166.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093166.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A2G9HWV6	0.0	A0A2G9HWV6_9LAMI; Transcription factor DLX
STRING	Solyc01g091630.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1626	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]