PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093149.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 342aa    MW: 38143.3 Da    PI: 6.356
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093149.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-184996148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++++ G g+W++ ++  g+ R++k+c++rw +yl
   XP_011093149.1 49 KGPWTPEEDEKLVEYINKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 96
                     79******************************99************97 PP

2Myb_DNA-binding49.87.8e-16102147148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
   XP_011093149.1 102 RGPFTVEEEKLVIQLHSILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 147
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-254099IPR009057Homeodomain-like
PROSITE profilePS5129418.5284496IPR017930Myb domain
SuperFamilySSF466893.33E-3146143IPR009057Homeodomain-like
SMARTSM007172.0E-144898IPR001005SANT/Myb domain
PfamPF002499.0E-174996IPR001005SANT/Myb domain
CDDcd001674.28E-115196No hitNo description
PROSITE profilePS5129425.68597151IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-25100151IPR009057Homeodomain-like
SMARTSM007173.5E-15101149IPR001005SANT/Myb domain
PfamPF002498.6E-15102147IPR001005SANT/Myb domain
CDDcd001676.30E-11104147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MLSSSLALFF LCGNCAVCLQ ELIEKFWDFC SVCLLMGRKP CCDKKGLKKG PWTPEEDEKL  60
VEYINKNGHG SWRSLPKLAG LLRCGKSCRL RWTNYLRPDI KRGPFTVEEE KLVIQLHSIL  120
GNRWAAIASQ LPGRTDNEIK NLWNTHLKKQ LLQMGIDPQT HKPSSTAKGP LNCLLSSLST  180
CHMTQWESAR LEAEVRLSRQ SLLLIPQSAG NKSEADFFLQ LWNSDVGETF RKLDKRENAT  240
SQSPISSSST KYDKLSGTVT EMALLAAGSN LNDDAECKSG KSCVEDGRPG SDSSSSNEME  300
DSSESELQLL LNFPSNDDMS LLGQTDCYYS LYPGIFTEST FN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30471515108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093149.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093149.10.0transcription factor MYB3 isoform X1
SwissprotQ9M2D91e-116MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2G9G4X21e-144A0A2G9G4X2_9LAMI; Transcription factor, Myb superfamily
STRINGSolyc01g094360.2.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-106myb domain protein 17