PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093108.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 315aa MW: 35438.5 Da PI: 6.1806 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 8.1e-21 | 119 | 169 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp+ r +r++lg+++taeeAa a+++a+ +++g XP_011093108.1 119 KKFRGVRQRP-WGKWAAEIRDPT----RrTRVWLGTYDTAEEAATAYDRAAIQIRG 169 59********.**********84....34************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.54E-34 | 119 | 176 | No hit | No description |
SuperFamily | SSF54171 | 5.75E-23 | 120 | 177 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.7E-15 | 120 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-39 | 120 | 183 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.3E-32 | 120 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.052 | 120 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MTSKISEPVK LSVHITTTTK SVSPASLKNH PSGGGGFSPK TPRLVRILVT DRDATDSSSD 60 EGESLRRVKK HVNEVRMVRV SVYPDRNDGE SSRNLTKKKR PPSLPHEASA EPLVGGKGKK 120 FRGVRQRPWG KWAAEIRDPT RRTRVWLGTY DTAEEAATAY DRAAIQIRGP NAVTNFTKPP 180 EADVTCVSGY ESRKEEWCEN LRSPTSVLKI NTNSATFVRS EFKNINNDMD QLNPTNSCSK 240 VEPAPAPIGR SSEGDFFIND CAVWDQYFSN NYFDFRSPTP LIYDEIRLEE DFIELGDDLE 300 SLTWDVDELF VDGFW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-22 | 116 | 176 | 1 | 62 | ATERF1 |
3gcc_A | 6e-22 | 116 | 176 | 1 | 62 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093108.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093108.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A2Z7BUG8 | 2e-95 | A0A2Z7BUG8_9LAMI; Uncharacterized protein | ||||
STRING | Migut.B01832.1.p | 6e-65 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-37 | cytokinin response factor 4 |