PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011092800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 101aa MW: 11434.7 Da PI: 8.4575 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32 | 2.8e-10 | 13 | 56 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ E + + +a + + ++ +W+ +ar +g gRt+++++ ++ XP_011092800.1 13 AWTAKENKDFEKALAVYDKDtpdRWANVARAVG-GRTEEEVRRHY 56 8********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.526 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 1.9E-8 | 10 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-5 | 12 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.12E-12 | 12 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-8 | 13 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.20E-8 | 13 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 101 aa Download sequence Send to blast |
MASSSMTRGS GSAWTAKENK DFEKALAVYD KDTPDRWANV ARAVGGRTEE EVRRHYDILV 60 EDINCIESGR VPFPNYRTTS SSGGGYMRNN EEQRMKNLKL Q |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-43 | 1 | 101 | 1 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011092800.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092800.1 | 3e-71 | transcription factor RADIALIS-like isoform X1 | ||||
Swissprot | Q58FS3 | 2e-43 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2G9GLQ6 | 4e-52 | A0A2G9GLQ6_9LAMI; Uncharacterized protein | ||||
STRING | XP_008782489.1 | 1e-41 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39250.1 | 6e-41 | RAD-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|