PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011092460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GATA | ||||||||
Protein Properties | Length: 301aa MW: 33427.5 Da PI: 5.6913 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.7 | 2.5e-16 | 183 | 219 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ XP_011092460.1 183 CQHCGVSEtsTPAMRRGPAGPRTLCNACGLMWANKGT 219 ******9999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 5.2E-9 | 44 | 79 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 13.228 | 44 | 79 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.9E-11 | 48 | 78 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.828 | 112 | 154 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.4E-15 | 112 | 154 | IPR010402 | CCT domain |
SMART | SM00401 | 6.0E-11 | 177 | 230 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-12 | 178 | 230 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.9E-15 | 181 | 224 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 8.787 | 181 | 234 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.02E-15 | 182 | 226 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 183 | 210 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.5E-14 | 183 | 219 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MRTAEVSTPM ISAAAGGDDT TSSAEEMSAP MPITVNNQLS VRLPVSRTSE LTISFEGEVY 60 VFPAVTPEKV QAVLLLLGDQ ETPNSITSPE FLLQLNDKAV DDVSSRPTDS RRIASLERFR 120 EKRKERCFEK KIRYTCRKEV AQRMHRKNGQ FASVKDLCKA SADNWVSGNI TPHPEPLSVL 180 RRCQHCGVSE TSTPAMRRGP AGPRTLCNAC GLMWANKGTL RDLSKGGRHI LDHNEAETLE 240 IKPPAAEPDN LYHNHDEEET LEELTNASGS EFEIPANFGE QVCTFRNSEQ LLDNSRPSYP 300 I |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011092460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020552859.1 | 0.0 | GATA transcription factor 19-like isoform X2 | ||||
TrEMBL | A0A068TMB9 | 1e-114 | A0A068TMB9_COFCA; Uncharacterized protein | ||||
STRING | Migut.N01100.1.p | 1e-119 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-55 | ZIM-like 1 |