PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092456.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 311aa    MW: 33127.5 Da    PI: 5.2469
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.75.7e-17228264135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgpdg++tLCnaCGl+++ kg+
  XP_011092456.1 228 CRHCGISSksTPMMRRGPDGPRTLCNACGLKWANKGV 264
                     *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.4E-1194129IPR010399Tify domain
PROSITE profilePS5132014.49594129IPR010399Tify domain
PfamPF062005.1E-1297128IPR010399Tify domain
PROSITE profilePS5101713.096161203IPR010402CCT domain
PfamPF062037.5E-16161203IPR010402CCT domain
PROSITE profilePS501149.605222282IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-13222275IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-12223274No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15226269IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.88E-14227275No hitNo description
PROSITE patternPS003440228255IPR000679Zinc finger, GATA-type
PfamPF003208.7E-15228264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MYGPPIASMS TSSAVQHQDT TASDMEEEEE EEEEEEDVVQ CSNGDGSLDN TRSRIGYEPP  60
NGSHSLDGAI VADAVGSHAL CGSDMAPAVA AAAGEGGPDQ LTLSFQGEVF VFDSVSPEKV  120
QAVLLLLGGY EVPTGIPTPG MTPTNHRYLS DYPGRLSQPQ RAASLNRFRE KRKERCFGKK  180
IRYTVRKEVA LRMQRKKGQF TSSKSDELGS SSADWNGNSG QEEQETSCRH CGISSKSTPM  240
MRRGPDGPRT LCNACGLKWA NKGVLRDLSK VPNGGLQHHA TRADEVLNGG ANGENAALPA  300
ANAIGSSNGN N
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092456.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0716709e-62KJ071670.1 Sesamum indicum clone TilSSR_42871 microsatellite Sesame_42871 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092456.10.0GATA transcription factor 24
SwissprotQ8GXL73e-80GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2G9HJG91e-139A0A2G9HJG9_9LAMI; Uncharacterized protein
STRINGMigut.B00543.1.p1e-126(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-79ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]