PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011092212.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 416aa MW: 46740.8 Da PI: 7.3269 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl XP_011092212.1 14 KGLWSPEEDEKLIKHITRYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 6e-14 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++ eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+ XP_011092212.1 67 RGTFSLEEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 109 899*******************.*********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.856 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.38E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.406 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.8E-13 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.94E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT RYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SLEEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS SIKKKLRQKG 120 IDPNTHKPLS EAAHNQEKTS PNTKNSNDKT SETYSSELSF FDGENSDNQA ILAAENPKPS 180 NSLRQSSNLA DAPPTSAHEL FLNRFLASHD QTSSTTSSRP SDFSGFLSFR QLHYGPNSGL 240 STNPNTNLVF STNDLKCLDI VPDHFSFNLP ARIKPDRNFP SDNPVSPFST KFQNWEACDN 300 GISTSNVNTF LENNGFQWGA ADCVKSEKSG GELTPEDIKI TEYLQSPFLQ GNTLQDYQTP 360 EDIYGETKSS QALFTAADQG PLMTNWHTNQ QQQSFQAAEI YSKHLQRIPA AFGQFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011092212.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092212.1 | 0.0 | transcription factor MYB86 | ||||
TrEMBL | A0A1S3YF18 | 1e-152 | A0A1S3YF18_TOBAC; transcription factor MYB86-like | ||||
STRING | XP_009628184.1 | 1e-152 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 1e-104 | myb domain protein 61 |