PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011092207.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 299aa MW: 34575.7 Da PI: 6.4239

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011092207.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00064	159	183	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H XP_011092207.1 159 FYCDLCNKQYKLAMEFEAHLSSydH 183 78*****************987555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	3.2E-18	62	107	IPR000467	G-patch domain
PROSITE profile	PS50174	16.853	64	109	IPR000467	G-patch domain
Pfam	PF01585	7.2E-16	65	105	IPR000467	G-patch domain
SuperFamily	SSF57667	2.28E-5	157	189	No hit	No description
Pfam	PF12171	1.6E-5	159	186	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	161	183	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MDNRWYSGKQ EMHNKRQLRN NEAYEATILE DLAEDFRLPI DHRVTENVDL DNVEQASLDT 60 QLPSSNIGFR LLQKMGWKGK GLGKDEQGII EPIKSGIRDA KLGLGKQEED DYFTAEENIQ 120 RRKLDIEVEE TEELAKKREV IAEREQKIQS EVKEIRKVFY CDLCNKQYKL AMEFEAHLSS 180 YDHNHRKRFK QMRDMHGSSS RDDRQKREQQ RQEREMAKFM QMADVHKQQL QIQNQEETGT 240 VPTPAATTSA TAVADQDQRK ALKFGFSAKG SMLRSSASTT AKKPKVAIAS VFSNDSEEE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011092207.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092206.1	0.0	G patch domain-containing protein 8 isoform X1
Refseq	XP_011092207.1	0.0	G patch domain-containing protein 8 isoform X1
TrEMBL	A0A2G9HNY5	0.0	A0A2G9HNY5_9LAMI; Uncharacterized protein
STRING	Migut.N00974.1.p	0.0	(Erythranthe guttata)