PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011091921.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NF-YC

Protein Properties

Length: 327aa MW: 36638.2 Da PI: 9.2786

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011091921.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.1	1.9e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++++v + ++fdfl ++v + XP_011091921.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYGITIHRGAKTVSSLHLKQCVHSYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.9E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.77E-20	4	88	IPR009072	Histone-fold
Pfam	PF00808	8.5E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YGITIHRGAK 60 TVSSLHLKQC VHSYNVFDFL REVVSKVPDY GNSDAAADTS KRSARKVVAN ESNDSDEELK 120 RGTMQETCQH ASSTGRGRGR GRGRGRGRGS RGIERESSRQ EVDSSSTTSL QSIKQILSPR 180 SPIENNSELN ESSKENIKVT DGVNSDSRNF DLNTGLDEAS DKMGSTTAAV AQPVVGIYEG 240 RQQGFIDSNN FYKKSEEKIR NLKEALQEMK SLDINEESKL SLENVKRLIQ MNFSENPLAW 300 WDRNMIKATL KIKEECKYEY VATNLSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-22	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	147	RGRGRGRGRGR
2	139	148	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011091921.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553013.1	1e-168	dr1-associated corepressor-like isoform X1
TrEMBL	A0A2G9GZU2	1e-109	A0A2G9GZU2_9LAMI; Class 2 transcription repressor NC2, alpha subunit (DRAP1)
STRING	Migut.N01867.1.p	2e-99	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-63	nuclear factor Y, subunit C11