PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011091869.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 536aa    MW: 58319.6 Da    PI: 4.9623
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011091869.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-183986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l
   XP_011091869.1 39 KGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLLRCGKSCRLRWANHL 86
                     79******************************99**********9986 PP

2Myb_DNA-binding51.13e-1692135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T eE+ l++++++++G++ W++ a++++ gRt++++k++w++
   XP_011091869.1  92 KGAFTSEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135
                      799*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.073486IPR017930Myb domain
SMARTSM007175.9E-153888IPR001005SANT/Myb domain
SuperFamilySSF466893.33E-3038133IPR009057Homeodomain-like
PfamPF002491.4E-153986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-244093IPR009057Homeodomain-like
CDDcd001671.02E-114186No hitNo description
PROSITE profilePS5129426.02387141IPR017930Myb domain
SMARTSM007171.4E-1691139IPR001005SANT/Myb domain
PfamPF002494.1E-1592135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2594140IPR009057Homeodomain-like
CDDcd001674.10E-1294135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MGRSSTTESE DGVLSADSPL SNDGDNFSGS SNGGFVLKKG PWTSAEDAIL VDYVKKHGEG  60
NWNAVQKHSG LLRCGKSCRL RWANHLRPNL KKGAFTSEEE RLIIELHAKM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP DLCLDPLPEN QQQLSSPGIC AGDKGCHEIL  180
ESTGYETHDL MFDSFNFLPY TPQFPDISGS VSTSNGFGSP QFYSFAQPIG VPKHAQEPDE  240
PMLDYGGGAP NETPPFDRTQ TASCTNKMSE SFGLCFPYVP DHTKKLLSFG VGQDSEIMSN  300
VISSASKHSA GAQELELPSL QYQETGIGLW DPAPESLDSF VQSPLPGPLP SHCPSSGSSG  360
LLEDLLYEAK ALSKSENQSS DWAASSNMSH GDITDSSALQ TYSREFKGYL DPSSPSGNSM  420
GSIFNGCTPT GTLGSSLEED MPVRHVKTEV YDQSWLLDGQ REKIMDHFDC SRPDAMLGSC  480
WFEHSAASHS NQQVSGTNAI AARTELKNTS ASSSTWALGS CSWNNMPAVC QMPDFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32371405107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011091869.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091869.10.0transcription factor GAMYB
RefseqXP_011091870.10.0transcription factor GAMYB
RefseqXP_011091873.10.0transcription factor GAMYB
RefseqXP_020552724.10.0transcription factor GAMYB
TrEMBLA0A059PRV50.0A0A059PRV5_SALMI; MYB-related transcription factor
STRINGMigut.O00612.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14059713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.37e-88myb domain protein 33