PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011091869.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 536aa MW: 58319.6 Da PI: 4.9623 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.9e-18 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l XP_011091869.1 39 KGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLLRCGKSCRLRWANHL 86 79******************************99**********9986 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T eE+ l++++++++G++ W++ a++++ gRt++++k++w++ XP_011091869.1 92 KGAFTSEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.07 | 34 | 86 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-15 | 38 | 88 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.33E-30 | 38 | 133 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-15 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-11 | 41 | 86 | No hit | No description |
PROSITE profile | PS51294 | 26.023 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 92 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.10E-12 | 94 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MGRSSTTESE DGVLSADSPL SNDGDNFSGS SNGGFVLKKG PWTSAEDAIL VDYVKKHGEG 60 NWNAVQKHSG LLRCGKSCRL RWANHLRPNL KKGAFTSEEE RLIIELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP DLCLDPLPEN QQQLSSPGIC AGDKGCHEIL 180 ESTGYETHDL MFDSFNFLPY TPQFPDISGS VSTSNGFGSP QFYSFAQPIG VPKHAQEPDE 240 PMLDYGGGAP NETPPFDRTQ TASCTNKMSE SFGLCFPYVP DHTKKLLSFG VGQDSEIMSN 300 VISSASKHSA GAQELELPSL QYQETGIGLW DPAPESLDSF VQSPLPGPLP SHCPSSGSSG 360 LLEDLLYEAK ALSKSENQSS DWAASSNMSH GDITDSSALQ TYSREFKGYL DPSSPSGNSM 420 GSIFNGCTPT GTLGSSLEED MPVRHVKTEV YDQSWLLDGQ REKIMDHFDC SRPDAMLGSC 480 WFEHSAASHS NQQVSGTNAI AARTELKNTS ASSSTWALGS CSWNNMPAVC QMPDFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-32 | 37 | 140 | 5 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011091869.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091869.1 | 0.0 | transcription factor GAMYB | ||||
Refseq | XP_011091870.1 | 0.0 | transcription factor GAMYB | ||||
Refseq | XP_011091873.1 | 0.0 | transcription factor GAMYB | ||||
Refseq | XP_020552724.1 | 0.0 | transcription factor GAMYB | ||||
TrEMBL | A0A059PRV5 | 0.0 | A0A059PRV5_SALMI; MYB-related transcription factor | ||||
STRING | Migut.O00612.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14059 | 7 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 7e-88 | myb domain protein 33 |