PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011091432.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

G2-like

Protein Properties

Length: 297aa MW: 32266.6 Da PI: 6.716

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011091432.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109	2.4e-34	41	95	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl XP_011091432.1 41 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 95 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.095	38	98	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-33	38	96	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-17	40	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-24	41	96	IPR006447	Myb domain, plants
Pfam	PF00249	8.9E-9	43	94	IPR001005	SANT/Myb domain
Pfam	PF14379	5.9E-27	139	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MYSALPIHSL AIDATGGEYH GSLDGTNLPG DACLVLTTDP KPRLRWTAEL HERFVDAVTQ 60 LGGPDKATPK TIMRTMGVKG LTLYHLKSHL QKYRLGKQAN KELTDNSKDA SCAAESQDTG 120 SSTSASSRMM AQDINDGYQV TEALRVQMEV QRRLHEQLEV QRRLQIRIEA QGKYLQSILE 180 KACKALDDQA VASAGLETTR EELSELAIKV ANDCHGMLPV PPATHVTSDM DKRNAPIIPA 240 RLGDCSTDSG LISNGSPISS SAAESQAAAL KKRPRPLFST GDSVPLDSNM RAVEWML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-19	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	275	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011091432.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091432.1	0.0	protein PHR1-LIKE 2 isoform X2
Swissprot	Q94A57	1e-130	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A4D9BKZ2	1e-164	A0A4D9BKZ2_SALSN; Uncharacterized protein
STRING	XP_006493809.1	1e-156	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-119	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]