PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011091364.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 28486.2 Da PI: 9.5689 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.7e-19 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd llv++vk++G g+W+ ++r g++R +k+c++rw +yl XP_011091364.1 21 KGPWTAEEDRLLVEYVKLHGEGRWNNVSRLAGLKRNGKSCRLRWVNYL 68 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 74 | 118 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ XP_011091364.1 74 RGQITPHEESIILELHARWGNR-WSTIARNLP-GRTDNEIKNYWRTH 118 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.497 | 16 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.66E-30 | 18 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-16 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-17 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-11 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 18.65 | 73 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-14 | 74 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.49E-10 | 78 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MYWEIMAENR GWGLMEEGWR KGPWTAEEDR LLVEYVKLHG EGRWNNVSRL AGLKRNGKSC 60 RLRWVNYLRP DLKRGQITPH EESIILELHA RWGNRWSTIA RNLPGRTDNE IKNYWRTHFK 120 KKGKPSSQNA EKSRARLLRR QQFQLQQQQQ HQTNTKTILP SFDENDNKLP TFTQLMRQEI 180 VLPSTSDEQG LLYSMINSCA AVPEQASNED MLMWDGLWNL DDLHGNITNR AYYQPALASN 240 FC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 21 | 122 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011091364.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091364.1 | 0.0 | myb-related protein 305 | ||||
TrEMBL | A0A2G9HUJ9 | 1e-116 | A0A2G9HUJ9_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | cassava4.1_013947m | 1e-103 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 1e-76 | myb domain protein 79 |